LOCUS E.coli.ref 9262 bp RNA RNA 11-JAN-1980 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL E.coli:who:Published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 762 a 639 c 912 g 591 t 6358 others ORIGIN 1 |--------- ---------- ---GGUUAAG CGACUAAGCG UACACGGUGG AUG|CCCUGG 61 |CAGUCAG|A G|GCGAUGAA GGA|CGUG(- -CUAA-UC)U |GC-GAUAAG CGUCGGU|-- 121 ---------- ---------- ---------- ---------- ---------- --------AA 181 GGU(GAUAUG A)ACCGUUAU AACCGGCG|- auuUCC-GAA UGGG(-GAAA )CC-C|AGUG 241 UGU------- -(-------- ---------- ---------- -----UUCG- ---)------ 301 --AC-ACACU ---AUCAUUA -A-CU-GA-- ------(--- ---AUC---- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------CA )-------UA GGU-UAAU-G AGG----CGA 481 AC|CGGGGGA -A--CU|GA( AACA)UC-UA AGUACC-C-C G-AGGAAA-- --AGAAAUC( 541 AAC-C)GA-G AU|UCCCCCA GU---AGC(G GCGA)GCG-A A-----CGGG GAGC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------GAG CCU-G---AA 841 UCAG------ ---------- ---------- ---------- ---------- UGUGU-GUGU 901 UAGUGGAA-- --G-CGU-C( U---GGAA-- -A)GGCGC-- ---------- --------GC 961 --|G(AUA)C |AGGG-(UGA CAGC)-CCCG UA|--CACAA AAAUGCACAU G-----CUGU 1021 GAGCUCGAU- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCG GGA(CA-CGU 1141 GGUA)UCCUG UCUGAA---U AUGGGG-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-ACCAU--- ---------- ---------- ---------- )CCU-CCAAG GCU----AAA 1381 UA-------- ---------- CUCCU-GACU GACCGAUAGU GAAC-CAGUA CC(GUGA)G- 1441 G-GAAAGGCG -AAA-AGAAC CCC(GGCGA- )GGGG-AGUG A-AAAAGAAC C-UGAAAC-C 1501 GUGUA-CGU< AC-AAGCAGU GGGAGCACGC ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (UU-AG)-GC GUGUGACUGC >------GUA CCU(UUUGUA 2581 UA)AUGG|GU CAGCG-ACUU AUAUUCUGUA GCAAGGUU-A ACC------( -------GAA 2641 UA)------- ---------- ------GGG- ---------- --GAGCCGAA GG(GAAA)CC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]AGUCU(UA ACU)GGGCGU UAAGUUGCA- 3181 -GGG-UAUAG ACCCGAAACC C-GGUG-AUC UAGC-CAUG- GG|C-AGGUU GAAGGUUGGG 3241 (UAAC----- -----)ACUA ACU-GGAGGA CCG-AA---C CG-ACU-AAU (GUUGAAAA) 3301 AUU-A-GCGG AUGACUUGUG GCUGGGG--G U--------- ---------- ---(GAAA-- 3361 --G)G---CC AAU-CAAACC GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU --(UUAG)GU 3421 AGCGC-CUCG -UGAAUU|CA U|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----CUCCG -G|GGG--UA GA-GC-ACUG UUUCGGCAA- -------GGG GGUC--(AUC 3721 CC-)--GACU UACCA-|ACC CGAU-GCAAA CUGCG-AAUA |CCGGAG--- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUGUU A|UC-ACGGG -AGA-CACAC -GGC-GGGU( 3901 GCUAAC)GUC CGU-CGUG-A AGAGGG(AA- ACAA)CCC-- AGACCGCC-- AGCUAAG--G 3961 U|CCCA-AAG U-C--AU-GG UUAAG-UG-- ---------- ----GG---- -AAACGAUGU 4021 G--GGAAGGC CCAGACA-GC CAGGAUGUUG GC(UUAG-AA GCA)GCCAUC AU|U(UAA)A 4081 |GAAAGC(GU AAUA)GC|-- -UCACUGGUC -GAGUCGGCC UGC|GC-GGA AGA--UGUAA 4141 CG-GGG-C-- UAAACCAUG| C|-------- --ACCGAA-- --GCUGCGG| (- UUAU-)-GCG UUGUU-GGGU AGGG------ 4441 --GAG|-CG- UU-CU-GU-- --------aa -G-C-CUg-- c------GAA GGUG------ 4501 U-GCU(GUGA -)GGCAUGC- UGG|A-GGU| A--UCAGAA- GUGC-GAA-U GCUGAC|AU- 4561 AAGUAACGAU -AAAGCGGG- U(GAAAA--- ---------- ---------- ---------- 4621 --)GCCCGCU |CGCCGGAA- G-ACC|AAGG GUU|CCUGUC CA-ACG(-UU AAU)CG|GGG 4681 CAGGGUGAGU |-CGACCCCU AAGGCGAGGC C(GAAA)<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>GGC 4921 GUAGUC-GAU -GGGA-AA-C AGG(UUAAUA UU-)CCUGU| -AC----UUG GU-GUUA-CU 4981 --[------- ---------- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- ---------] GCG-AAGGGG 5101 GGAC-----G GAG--AAGGC UA-U-GUUG- -GC-CGGG(C GACGGUUGU) CCCGGU-|UU 5161 AAGCGUGUA- ---------- GGC|-----U GGUU--UUCC ---AGG(CAA AU-)CCGGA- 5221 AA-AU-CAA- GGCUGA---- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----GGC-G UGA-----UG 5341 ACGAGGCAC( --UACG--)G UGCUGAAG-C AACAAA---U -GCCCU--GC UUC--CAGGA 5401 AAA-GCCUCU -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ----AAGC-- ---------- ----AUCAGG --UA-ACA-- UC-AAAUCGU 5581 A|CC--CCAA ACC(GACACA )GG|UGG-UC AGGUA(GAGA A)UACCAA-| GGCGC-||U- 5641 UG-A--GAGA AC-UCGG-GU G-AAGGAACU AGGCAA-AAU -GGUGCCGUA AC(UUCG)GG 5701 AGAAGGCAC| GCUGAUAUGU AGGUGAGGUC C(CUCGC)<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ----->GGAU GGAGCUG-AA AUCAGU|C(- --GAA)GAUA 6601 CCAGCUGGCU G|-CAACUGU UU(AUUAA)A AACACAGCAC UGUG|C--AA A|CAC(---- 6661 gaaa)GUG-- ---------- --G-ACGUAU ACGGUGUG-- ACGCCUGCCC GGU|GCCG-G 6721 AA-GGUUAAU UGAUGGGGUU AGC-(GCAA) GCGAAGCUCU UGAUCGAAGC C|CCGGUAAA 6781 C|GGC|GGCC GU(AAC-UAU A)ACGGUC|C (UAA)GGUAG CGAAAUUCCU U|GUCGG-G( 6841 UAAGU)UCCG AC|CUGCACG AAUGGCGUAA UGAUGGCCAG GCUGU-CUCC ACCCGAGACU 6901 CA|GUGAAAU U|GAACUCGC UG(UGAA-GA UG)CAGUGUA -C-CCG-CGG CAAGACGGAA 6961 AGACCCCGUG A|ACCUUUAC UAU-|AGCUU G---ACA-CU |GAACAUUGA GCCUUGAUGU 7021 GUAGGAUAGG UGGGAGGCUU UGAAGUGUGG AC-------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- --------(- -GCCA)GUCU 7141 GCAU-GGAGC C-GACCUUGA AA-UACCACC |CUUUAAUG- --UUUG-AUG UUCUAACGUU 7201 GACCCG(UAA UC)CGGGUU| GC-------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------G GACAG-UGUC U-GGUG-GGU AG-UUUGACU G(GGG)CGGU 7561 --C|UCCUCC (UAAAGAGUA AC-)GGAG-G A|G|C|ACG- AAGGU-UGGC |UAAUC-CUG 7621 -G(UCG---- GACA)UCAGG AGGUUA|GU( G|C--AAUG) GCAUAAG-CC A-GCUUGACU 7681 -GCGAGCG(U G---ACGG-- )CGCGAGCAG GUGC(-GAAA )GCAGGU|CA --UAG|UGA- 7741 UCCGGUGG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---UUCUG(- --AAU-G--G A---)----- ---------- 7861 -----AGG|G CCAUCGCUCA AC|GGAUAAA AGGUACUC|C GGG|GAUAAC AG|GCUGAUA 7921 CCGCCCAAGA G(UUCAU)AU CGACGGCGGU GUUUGGCACC UCGAUGUC|G GC-U|C|AUC 7981 AC|AUCC|UG G-GGCUG(AA -GU-)AGGUC CCAA-GGGU| AUGGC(UGUU C)GCCAUUUA 8041 AAGUGGUACG CGAGCUGGGU UUAGAAC--- ---------G UC(GUGA)GA CAGUUCGGUC 8101 CCUAUCUGCC GUGGG-C--- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- -----GCUGG AG-AA-CU-G AGGGGGGCUG CUCC(UAGUA 8281 C(GAGA)GGA CC-)GGAGUG G|ACGCAUCA CUGGUGUUCG GGU|-UGUCA U(GCCA)AUG 8341 GCACUGCCCG GUAGCUAA-- AU-GCGGAAG AGAUAAGUGC U(GAAAGCAU C-U-A)AGCA 8401 CGAAACUU-G CCCCGAG-AU GAGU--UCUC C<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------> CU|GACCCU( UUA)AGGGUC 8701 -CUGAAGGAA |CGUUG(-AA GACGA)CG-A CGUUG---AU A-G|G-CCGG GUGUGUAAGC 8761 GC--A----- ------(GCG A--------- ---------- ---------- ---------- 8821 ----)----- ------UG-C GU-|UGAGCU A|A----CCG G----UAC-U AAU-GAA-CC 8881 GUGAG|GCUU AACCuu|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (1)-Eukary 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (2)-Amoebi 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS A.proteus 9262 bp RNA RNA 30-SEP-1988 DEFINITION Amoeba proteus.; 28S ribosomal RNA. ACCESSION M19222 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Amoeba proteus. ORGANISM Amoeba proteus. REFERENCE 1 (bases 1 to 419) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J.-P .P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19222 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 173717 BASE COUNT 92 a 118 c 139 g 66 t 8847 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~nncg )---accucg gau-cagu-c acg----gcc 481 ac|CCGCUGA -A--UU|UA( AGCA)UA-UU AAUAAG-C-G G-AGGAAG-- --AGAAACC( 541 AAC-C)GG-G AU|ACCCCCA GU---AAU(G GCGA)AUG-A A-----GAGG GUAG------ 601 ---------- ---------- ---------- ---------- -agcuca|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --aaccgaau ccgucguccc --gcggcggc g--gcagucg gggcccccgg ucccggaggu 781 cgucgucgcc cc-cgagugg gc-ggccgag cugugguu-- ugcagacugg cg-------- 841 --uucgcg-- ---------- ---------- ---------- ---------g cgagc-ccgg 901 cggc-caa-- --g-ugu-g( u-(uggaac- )a)cuc-c-- ---------- --------GC 961 --|C(CUA)G |AGGG-(UGA GAGC)-CCCG UU|--guuug ccggcgcgag c-----ccgg 1021 accgu----c cgccaguc-c ca-------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 AGAG)UGCAG CCUcca---a -agGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaggucc-- ---------- ---------- ---------- )CAU-CCAAa gcu----aaa 1381 ua-------- ---------- CGGCG-GGGA GACCGAUAGU ACAA-AAGUA CU(GUGA)A- 1441 G-GAAAnn~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Dictyo 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS D.discoide 9262 bp RNA RNA 09-JAN-1985 DEFINITION Dictyostelium discoideum 5.8S and 26S. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum 5.8S and 26S. ORGANISM Dictyostelium discoideum 5.8S and 26S. REFERENCE 1 (bases 1 to 419) AUTHORS No information JOURNAL 4171-4184(1984) STANDARD No information COMMENTS Organism information Culture collection: ? and M19231 Sequence information (bases 1 to 9262) Corresponding GenBank entry: X00601 V00189 Phylo:Eukaryotes,Protozoan This one and M19231 are the same through all of M19231 BASE COUNT 984 a 612 c 861 g 946 t 5859 others ORIGIN 1 |--------- ---------- ---------- ---UUAAGCA UAAACGGUGA AUA|CCUCGA 61 |CUCCUAA|A U|-CGAUGAA GAC|CGUA(- -GCAA-AC)U |GC-GAUAAU UC-acuu|[- 121 gaauugcag- ccuacuggga u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---aguug|A AAUGUU-GAA Cgc-(acau- )-gau|gaca 241 ucggu----c c(-------- ---------- ---------- -----uuuc- ---)gg---a 301 uuag-guguu ---auacuug -g-gu-gaga gugg--(--- ---uc----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ccgccuc acc-uuug-u aAG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AGUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-U)AG-G AU|UCCGUCA GU---AAC(G GCGA)GUG-A A-----GACG GAAU------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aggu ucaaaccugg 781 aucuc-(uuc ---)---gag gc-uagguga ugugaccu-- -----a---- --uggacuga 841 ugg------- -ag-ccc-gc ---------- ---------- ---------- uguug-ug-a 901 cugc-uaau- --u-ccg-u( u-(uggaau- )u)ucg-a-- ---------- --------GU 961 --|C(GUA)G |AAGG-(UGA UAAC)-CCUG UU|--cgcag uaucacaaca g-----uugg 1021 acuuug---- --ccauua-g cuccac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGAAU GUC(----UG 1141 AAAU)UGCAU UCUGAA---- -uGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAGAUU-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- --------u- AUGUU-AGGA GAUCGAUAGC AUAC-AAGUA CC(GUGA)G- 1441 G-GAAAGGUG -AAA-AGAAC UUU(ga-aa- )AAAG-GUUU --AAAAGUAU U-UGACAC-C 1501 GUUUA-UGU< gg---aagcg uuuacuug-g accccgau-u aaugacgucg guuuagcucu 1561 aauucuuagg uggccaaagu agagu--guu acgugcugau ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ----caaaag guaacggaca uuugauucau 2101 ugguuaucga cgaggaaggu acucuaaauc ggccaguuac uaacggguga gaucugaugu 2161 uuauaaaaug ggggaugagg cuuaucggcu ugcugguggc ucgcucucaa uaa--uggau 2221 auuggguuuc aucaagagu- gcaaaaugg- -uggcaauuc acua---uua gugguuauua 2281 auuuuguuug cguggc---- -uuggccuug ucuacagguu auc--(uucg -)--gauggc 2341 uu---guagc uuuguuga-- ------acgc gu-gggcuua auguu----- ----gugauu 2401 c-u------- -----(agu- ----)----- ----agcguu acc------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- --------au 2521 aucg-uua-- --------ga gug-ggu--u caa-uaaaug >------UCC CGU(CUUGAA 2581 AC)ACGG|AU CAAGG-AGGC CGUUUUGUGU GCGAGUGu-a agagu----( ----a-auua 2641 aa)------- ---------- ---a-cucu- ---------- --gaCGCGUA UU(GAAA)GA 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----gaaua cuccaaa-ag aucguaac-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uacg-- ----)----- ---------g uuac-cuucu -guaaggagu 3061 g--------- ---------- ---------- ---------- -------ccc gaauc-auga 3121 gaa(c-ucug u)uucgaaag -gau-uugcg g]-------- ---------U UGAGCACCU- 3181 -AGA-AUGGG ACCCGAAAGG U-UGUG-AAC UAUG-CCUG- AG|G-AAGGC GAAGUCAGGG 3241 (GAAA----- -----)CUCU GAU-GGAAAC UUG-UC---G CA-AUGCUGA (CGUGCAAA) 3301 UCG-C-UUGU CUAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACA ACCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-uGGA -GCa---|-- -|-guau--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------uc 3661 u-aguUCCAU -C|UuG--UA AA-GACAAUG AUUAGCAGU- -----UUCGG GGGC--(gua 3721 a-u)--GCUC U-CAG-|CUG AUUC-UCAAA CUCUG-AACG |GGUGGGuau -cauuuuaa- 3781 uucacuuaau uggauuuuaa aauuaaauug cacaugugca -------aug ---------a 3841 aa-------- ---------- ----AAUa-g g|aG-CUCUu -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGUGG(GU- UGAA)CCA-- AAUAUUG--- GGAUAAG--A 3961 C|GUCU-AAC --A--UU-CA CUAAU-ag-- --------au -accac---- -AAAAGGUGU 4021 U--AGUUCAU UAAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGUAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -AAAUGGACU AGC|CC-UGA AAA--UGGAU 4141 G--ACg-cua gcAGUGGAU| G|-------- --GUCGAU-- --GCCCAAU| (- -----)-cuu uuaac-gUGU AGGA------ 4441 --AGG|-CG- UG-AA-GG-- --------u- -a-a-cgu-- a------GAA GCUU------ 4501 G-AAU(GUGA -)AUUCGAG- UGG|A-GUU| G--UCUUUA- GUGC-AGA-U CUUGAU|GG- 4561 UAGUAGCAAA -UAUUCAAA- A(gaauuua- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GGA|AAGG GUU|CCAUAA CA-AUG(-GA AUU)CA|CUU 4681 AUGGGUGAGU |-CGA-UCCU AAGG------ ---------- 4921 ----CC-GAA AGGGA-AG-C GGG(UUAAAA UU-)CCUGC| -AC----cau cg-aaug-gg 4981 au[auua--- ---------- ---------- ---------- ------gg(- -guaa--)cc 5041 ---------- ---------- ---------- ---------- -----ga-u] cgu-aauccg 5101 ggac-----a uca--auugg cg-g-ucga- -gg-aaga(G UUAUCUUU-) ucucgu-|UA 5161 A-cauuguc- ------u-ug ggg|u---cc uccg--aauc ----gg(guc aa-)cugga- 5221 ga-cg-agg- auucauc--- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- -------gc- ----acaa-u gGA-----AG 5341 AGCACAGUC( -cuuug--)G AUUGGGUC-u cgcauc---c -gcuaa--au gguC-CUUGA 5401 AAA-ccggau -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------u augguauu-- ---------- ----uaaucc --ua-uuu-- gg-uguUCGU 5581 A|CC--AAUA ACC(ACAUCA )AG|UCU-CC AAAGU(AAAU A)ACCUCU-| AGUCA-||Aa 5641 UA-U--AUUA AU-AUAA-AU A-AAGGGAAU CAACAA-AAC -CAGUCUAUA AC(UUCA)GG 5701 GUAAAGGUU| AGCUCUAAA- ---------- ------------ -------UUU AGAACU|G(- --UGA)CGAU 6601 CACCGGGAAU C|-CAACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UA A|GCU(---- 6661 uaaa)AGC-- ---------- --U-UUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----CCUAGC A|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUCAA UGAGAUUCCC ACUGU-CCCU AACUACUAUA 6901 CA|GCGAAAC C|acu-gCAA GG(GGAA-CG GG)CCUUGCA -A-AAA-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---AUA-UU |GCAUAGUGA CCUAAAAGGU 7021 GUAGAAUAGG UGGGAGGG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCAA)---- 7141 --------CC C-GACGGUGA AA-UACCACC |CCUUUUGG- -CGUUA-CUU UGCUAAc--- 7201 ---------- ---------| --g AACAG-UUUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUUUGU (UAAAAGAUA AC-)GCAA-G U|G|U|CCA- AAGGC-AGGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|GU( A|A--AAGG) GCAAAAG-CC U-GCUUGAUU 7681 -CUGAUUU(u c--aguaac- )uAAUCGGAA CUGG(-GAAA )CCAAGG|CC --UAU|CGA- 7741 UCCUUUA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- uguG-CUU(- -AAAU-C--U U---)----- ---------- 7861 -----AAG|C cUAGAG-GUG UC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(CUCAU)AG CGACGCUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 UU|AUCA|UU G-UGAAG(CA -GA-)AUU~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~- ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Diplom 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS G.ardeae 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia ardeae. ACCESSION No information KEYWORDS No information. SOURCE Giardia ardeae. ORGANISM Giardia ardeae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X58290 Giardia ardeae, Harry van Keulen Sequence of G. ardeae; 1 - 10 3' end 18S 48 start 5.8 S 240 start "28S" 2924 end "28S" BASE COUNT 489 a 953 c 1041 g 343 t 6436 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~c augcagaccc agaccggcGG AUG|CCUGGG 61 |CUCGGGC|C U|-CGAGGAA GGA|CGCG(- -GCGG-AC)A |GC-GAGAug cggugc-|[- 121 -agcccggc- --ac------ gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G GUUUCC-GAA cgc-(-ucg- )-g-c|cucc 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 ------ggag ---accggcc -g-cu-cggc ggg---(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------gac )--ucccccg agc-ggcc-g gGG----ACG 481 AC|GGGCGGG -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-AGGAGG-- --AGACACC( 541 AAC-A)GG-G AU|UCCCG-- GU---AGC(G GCGA)GCG-A C-----GCGG GAGG------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------cc 781 ccgaag(ggc cg-)cugugg g--------- ---------- ---------- ---------- 841 --gcgugg-- ---------- ---------- ---------- ---------- ccgag-ccgg 901 ggggagaa-- --g-uga-g( g-(gggagc- )c)cuc-c-- ---------- --------GC 961 --|C(GGA)G |CGGG-(UGA GAGC)-CCCG UC|--uccc- --cgggcgcg ------ggcc 1021 acgc------ ---------- -ggg------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCGCC GCU(----UG 1141 AGAG)UGCAG CGCGAA---- -cGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAUGCC-- ---------- ---------- ---------- )CUU-CCAAG GCU----GAA 1381 UA-------- ---------- CCGGC-CCGA GACCGAUAGC GGACCAAGUA GU(GCGA)A- 1441 C-GAACGGUG -AAA-AGGAC GCC(cccgag )GGCC-GCUC --AAAAG-AC C-UGAAcc-c 1501 ggcug-gcg< ------cccc gagggcccag g--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (gc-ga)ccu gg-ccgucgg >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGCC GCCCCCCGGC GCGAGUCa-g aggac----( -------ggg 2641 --)------- ---------- -----gucc- ---------- -uguGGCGGA GC(GACG)GC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ---------- -------gau cc(-ccc-)g ga-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --gccc-(-- 3121 ugcg---)-- --gggcc--- ---------- -]-------- ---------- -GAGCGGCG- 3181 -GGG-GGCGG GCCCGAAAGG C-GGUG-AUC UACG-CCCG- GC|C-AGGGC GAAGCCAGGC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCG-CC---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CCGAGCCGGG CGUGGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC GCCUGGUAGC UGGUUGCCUC CGAAAUUUCU --(CCCA)GG 3421 AUAGC-CGCC -ACC--c|-- -|-ggc---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --agcuGCGG -C|CGG--UA GG-GC-CGCG ACCGGCGGG- -----AGCGG GGGA--(ccu 3721 g--)--UCCC U-CGU-|CCG CCCC-UCGAA CUCCG-AACG |GCCGCgc-c -ac-ggggc- 3781 c-gcuuggcu g--ggcgccg uggggc---- ---------- ---------- ---------- 3841 ---------- ---------- ----agug-c g|GG-UGGCG -UGU-GGGCC -UCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGACGG(GA- UGAU)CCG-- GAAGCCG--- GGCCAGA--G 3961 U|GCGG-GAC --C--CA-GG CGgagc---- ---------- -----g---- -AAACGGCGU 4021 C--GGUCGGU CCUGACA-GC UGGAAGGUGG CC(CUAG-UA GUC)GGAAUC CU|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGACG GGC|CC-GGA AAA--UGGAA 4141 C--GCA-CG- CGAGCCUGG| G|-------- --ACUCAC-- --GCCCGGC| (- cgcg-)---- -uggc-GGGU AGGA------ 4441 --GGC|-CG- CG-GC-GC-- --------u- -c-g-ggu-- c------GAA GGCG------ 4501 G-GGG(GCGA -)CCCGCGC- UGG|A-ccg| g--GCGCCG- GUGC-AGA-U CUCGGU|AG- 4561 CAGUAGCCAC -UACUCCG-- -(ucacc--- ---------- ---------- ---------- 4621 --)--CGGAG |GCCUggg-u G-GAG|AAGG GUU|CCGUGG CG-CCC(-GG CGU)GG|ACC 4681 ACGGGUGACU |-CGG-CCCU AAGC------ -------<-g cguggu(--g ucg-)a-cca 4741 gag------- ------gacg uac(cccc-- -------)gu acg-cccg-- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGG-AA-C CGG(CGAAGA CU-)CCGGU| -AG----agc gc-agga-uc 4981 --[------- ---------- ---------- ---------- -g---ccg(- -gcga--)cg 5041 c--------- ---------- ---------- ---------- ------g-u] ccg-cccgag 5101 -cac-----g ugc--acggg cc-a-ggcg- -au-ggga(G CCGCCGCG-) ucccag-|cc 5161 cccgcucc-- ---------- ---|-cgcgu gccc-ccgag ----ac(cuu gc-)guggcg 5221 ccggg-gcac g--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ggag-c guc-----u- 5341 ---------( --------)- ---------c gccgc----g -gcccg--gu cacC-CCUGA 5401 AAC--cucgg g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -----cgg-- ---------- ------ggcg --ug-cug-- cg-cugCCGU 5581 A|CC-----C ACC(GCAGCA )GG|ACU-CC GAGGU(GAGC A)GCCUCU-| GGGC--||g- 5641 gg-a--gAGA CC-GUGA-CU C-AGGGAAGU CGGCAA-GUU -AGCUCCGUA AC(CUCG)GG 5701 AUAAGGAGU| GGCUCUGAU- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------c 6541 c(gcc--)gg a--------- ----->---- -------CUC AGAACU|G(- --GAA)CGGA 6601 CucGGGGAUC C|-CGACUGU CU(AAUAG)C AACACAGCGU CGUG|C--GA G|uc-(c--u 6661 gauc)-ga-- ---------- --U-GCGGAC ACGACGUG-- AUUUCUGCCC AGU|GCCACG 6721 AC-CGUCAC- ---cgugaa- ----(gagg) -----uucac ----CCAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 UAAUU)UCCG AC|GUGCAUG AAUGGACCAA CGAGGAUCCC ACUGU-CCCG AGUCACGCcu 6901 cc|gcgaacc u|aca-gACC CG(GGAA-CG GG)CGGGUGC -C-GGU-CGG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AGCCC G---GCC-CU |GGGGGGCGG GGUCACCGGC 7021 GCACGGUACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-GCCCAUGA GA-CACCCUG |ACGGUGAC- -CACCG-CCC CACUUAc--- 7201 ---------- ---------| --g GACAC-GGCC G-GGCG-GGG AG-UUUGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UAGACAGCA CC-)GCAG-G C|G|U|CCC- ACGGC-GAGC |UCAGC-GAG 7621 -G(ACG---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCCCGACC 7681 -CGCGCCA(c c--agucc-- )cGGCGCGCg g-GC(-GAAA )GCGCGG|CC --UAC|CGA- 7741 UCCUUCGG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cG-CUC(- -GGGC-A--U C---)----- ---------- 7861 -----GAG|C GCGGAG-gug aC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(CCCGC)AG CGACGCGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCGCG(CA -UC-)GGCGC GGAA-GCGU| CGGAU(UGUU C)ACCCGcuc 8041 c-AGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUAUCCUACC GACC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----c cg-gg-gc-G AGAGCACGGC GGGU(CAGUA 8281 C(GAGA)GGA AC-)GCCCGC C|GCGGGCCG CCGGu-cuCG CGG|-UUGCC C(GGCA)GGG 8341 CAGCGCCGCU C-CGCCGC-- GC-CCGg--G GGCCUAGCGC U(GAACGCCU C-U-A)AGCG 8401 CGCACCCC-g CCUCg----- gacc--ccgu c<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- --cgacgcc( 8641 ccacccuagc cccgcg-cac --cccg-c)g gcgucg---> --|------- ---------- 8701 ------ccgg |ccggg(-ua gacga)cc-c gccgc----- agc|gcuccu -gu-acgcgg 8761 cg-g-agc-- ------(ccc gcgcgacc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- gaa|-cgccc -|-------- ----cu-gc- -cc-gcc-gc 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinalis. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X52949 ID GIRRNATR standard; DNA; INV; 5566 BP. AC X52949; DE Giardia intestinalis DNA for rRNA tandem repeat unit OC Eukaryota; Protozoa; Flagellata; Polymastigina. BASE COUNT 457 a 1111 c 1192 g 278 t 6224 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACGCC CCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G ACCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gccc--(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------gcg )--cggcccg agg-cggc-g gGG----GCG 481 AC|GGGCGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-CGGAGG-- --AGAAACC( 541 AAC-C)GG-G AU|UCCCC-- GU---AGC(G GCGA)GCG-A C-----GCGG GAgr------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 --cccc(gaa ---)gg-cgc ---------- ---------- gcugug---- ---------- 841 gggcgcag-- ---------- ---------- ---------- ---------- gcgca-ggcc 901 cgccgcga-- --g-ggg-g( c-(ccgagg- )g)ccc-c-- ---------- --------GC 961 --|C(CGA)G |AGGG-(UGC AAGC)-CCCG UA|--cggc- --ggccgccg g-----gccu 1021 ---------- ------gc-g cggc------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCGCU GCU(----UG 1141 AGCG)UGCAG CGCGAA---- --GGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GCGCGGCC-- ---------- ---------- ---------- )CUU-CCAAG GCU----AAA 1381 UA-------- ---------- -CGCC-CCGG GACCGAUAGC GGACCAAGUA GC(GCGA)G- 1441 C-VAACGGUG -AAA-AGGAC GCC(cu-gc- )GGCC-GCUC --AAAAG-AC C-UGAACC-C 1501 GGCCG-GCC< gc---cggcc ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (cg-cc)--- --------gg >------CCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGCC ACGCGCCGCG GCGAGCCc-g aggg-----( -------agc 2641 c-)------- ---------- ------ccc- ---------- --gcGGCGGA GC(GAGC)GC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ----gacgcc ccgggcccgc cg(cgccc)c ugcgggcgug cgcgggcc-- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- -------(-- 3121 -------)-- ---------- ---------- -]-------- ---------- -GAGCCGCG- 3181 -GCG-CGUGG GCCCGAAAGG C-GGUG-AUC UAUG-CCCG- GC|G-AGGGC GAGGCCGGGC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCG-CC---G CG-GUGCUGA (CGCGCAGA) 3301 UCG-C-UCGU CGGAGCCGGG CAUGGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC GCCUGGUAGC UGGUUGCCUC CGAAAUGUCU --(CCCA)GG 3421 ACAGC-CGCC -GCC--c|-- -|-cgc---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --aguuGCGG -C|CCG--UA GA-GC-GCUG GCCGGCGGG- -----AGCGG GGGG--(ccu 3721 g--)--CCCC U-CGC-|CCG CCCC-CCAAA CUCCG-AAGG |GCCGCgc-c -gc-cccgc- 3781 c-gcuggccu g--ggcgggg cgggcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-c g|GG-CGGCG -CGU-GGGCC -CCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGGCGG(GA- CGAU)CCG-- GACGCCG--- GGCCAGG--G 3961 U|GCGC-CGC --C--GG-GG CCcgc----- ---------- -----g---- -GAACGGCGU 4021 C--GGCCGGU CCCGACA-GC UGGAAGGUGG CC(CCAG-AA GUC)GGCAUC CU|C(CAG)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGGCC GGC|CC-GGA AAA--UGGAG 4141 C--GCG-CC- GGAGCCCCG| G|-------- --ACCCGC-- --GCCCGGC| (- cgcg-)---- -cggc-GGGU AGGA------ 4441 --GGC|-CG- CA-GA-GG-- ------ccc- -c-g-gggg- c------GAA GGCG------ 4501 G-CGC(GCAG -)GCCCCGC- CGG|A-CCG| G--CCUCUG- GUGC-AGA-U CUCGGC|AG- 4561 CAGUAGCCGC -UACUCCG-- -(cgccc--- ---------- ---------- ---------- 4621 --)--CGGAG |GACUGAGGG G-GAG|ACGG GUU|CCGCGG CG-CCU(-GC AUC)UG|GCC 4681 GCGGGUGACU |-CGG-GCCU AAGC------ -------<-g gcgggu(--g aag-)a-ccg 4741 gga------- ------aggg gcg(ugcc-- -------)cg ccc-g----- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA cGGGG-AG-C CGG(CGGAGA CU-)CCGGC| -AG----gcg cg-gccc-cc 4981 --[------- ---------- ---------- ---------- -----gcg(- -gaga--)cg 5041 c--------- ---------- ---------- ---------- ------c-c] gcc-ccccgg 5101 cgac-----g cgc--acggg ga-c-cgcg- -gc-gggc(G GCGCCCCG-) gcccgc-|GA 5161 Acgcccc--- ---------- ---|-gcagc cccc-gga-c ----gc(cuu gc-)gcggag 5221 ag-gg-gggc ccg------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----ggg-g cgg-----ac 5341 cc-------( --------)- ---------c gc-gcg---u -ccccg--gc cgcC-CCUGA 5401 AAA-gccggg g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -----ggc-- ---------- ------gc-- --cg-gcc-- gc-gcgCCGU 5581 A|CC-----G ACC(GCAGCA )GG|ACU-CC GGGGU(CAGC A)GCCUCU-| AGCGc-||g- 5641 gg-a--gCGA AC-GCGG-CU C-AGGGAAGU CGGCAA-GCC -GGCUCCGUA AC(CUCG)GG 5701 AAAAGGAGU| GGCUCUGAC- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------g 6541 g(cgc-g)cc gg-------- ----->---- -------GUC AGAACU|G(- --GAA)CGGA 6601 CGCGGGGAUC C|-CGACUGU UU(ACUAG)A AACACAGCGU CGCG|A--GG G|CCG(---- 6661 cacc)CGG-- ---------- --C-GCUGGC GCGACGUG-- AUUUCUGCCC AGU|GCCACG 6721 AC-CGUCAC- ---cgugaa- ----(gcga) -----uccgc ----CGAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 CAAUU)UCCG AC|GUGCAUG AAUGGACCAA CGAGGAUCCC ACUGU-CCCG AGCCGCgccu 6901 cc|g-gagcc u|cca-gCCU CG(GGAA-CG GG)CGAGGGC -C-GGC-CAG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AGCCC G---GGC-CU |GUGGGGCGG GGCGGCCGGC 7021 GCAGCGCACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-GCCCCUGA GA-CACCCUG |ACGGCCGC- -CGCCG-CCC CGCUCAc--- 7201 ---------- ---------| --g GACCC-GCCC G-GGCG-GGG AG-UUCGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UACACCGGA CC-)GCAG-G C|G|U|CCC- ACGGC-GGGC |UCAGC-GAG 7621 -G(ACG---- GAGA)CCUCC CGCGGA|GC( A|G--AAGG) GCACAAG-CC C-GCCCGACC 7681 -CGCGCCC(c c--cgugc-- )CGGCGCGGG CCGC(-GAAA )GCGGGG|CC --UAC|CGA- 7741 UCCUUCGC-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cG-CCC(- -CGGC-C--G C---)----- ---------- 7861 -----GGG|C GCGGAG-gug gC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCGAGC G(CCCGC)AG CGACGCGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCGCG(CA -CC-)GGCGC GGAA-GCGU| CGGAU(UGUU C)ACCCGuuc 8041 a-AGGGAUCG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GGCC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----c cg-gg-gc-C AGAGCACGGC GGGC(CAGUA 8281 C(GAGA)GGA AC-)GCC-GC C|GCGGGCCG CCAGc-ccCG CGG|-UUGCC C(GGCC)GGG 8341 CAGCGCCGCG C-CGCCGC-- GC-CCGg--G GGCCCUGCGC U(GACCGCCU C-U-A)AGCG 8401 CGCACCCC-g CCUCg----- cgcc--ccgc c<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------c ggccgcgcg( 8641 ---ccccagc cccgug-ccc c-gucg-c)c gagcggccc> --|------- ---------- 8701 ------ccgc |ccggg(-ga gacca)cc-c ggcgc----- ggc|gcuccu -gu-acggcg 8761 ca-g-agc-- ------(ccu gc--gauc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- gga|-cgcgc c|---ugcag a--gcg-cg- --g-ggc-gg 8881 ggcg-|---- ------|cgc ggcccacuug cu----cugg gggggugcgg ggcagacaga 8941 caggcagagc gcggaaagag aagauugagg gagugcaggg ugccccaagg gguggccagg 9001 gggcagugca cgcccaccac cgggucugcc uugcacagag agacgcccgu gugcgcaggg 9061 gggcggcgca ggaccgcagg gggcccgggg gaggcggccc ggggga~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.2 9262 bp RNA RNA 06-JAN-1988 DEFINITION Giardia intestinalis. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 (bases 1 to 419) AUTHORS No information JOURNAL June 6, 1988 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: X05396 Y00331 This sequence is a compilation of Gen-Bank entries GLARRN58S and GLARRNALS LOCUS GLARRN58S 651 bp ds-DNA INV 15-MAR-1988 DEFINITION Giardia lamblia rDNA for 5.8S rRNA and part of LSRNA and SSRNA. ACCESSION X05396 Y00331 BASE COUNT 96 a 252 c 260 g 46 t 8608 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACGCC CCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G ACCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gcccg-(--- ---cc----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cggcccg agg-cggc-g gGG----GCG 481 AC|GGGCGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-CGGAGG-- --AGAAACC( 541 AAC-C)GG-A AU|U...... ........(. ....)...-. .-----.... .......... 601 .......... .......... .......... .......... .......|-- --------.. 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .....---.. 841 ........-- ---------- ---------- ---------- ---------- .....-.... 901 .........- --.-...-.( .-(......- ).).....-- ---------- -.-.-..... 961 --|.(...). |....-(... ....)-.... ..|--..... .......... .-----.... 1021 .......... ........-. .......... ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|. ...-...... ...(..-... 1141 ....)..... ......---. ......-.(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- )...-..... ...----... 1381 ..-------- --------.. .....-.... .......... ....-..... ..(....).- 1441 .-........ ....-..... ...(.....- )....-.... .-........ .-........ 1501 .........< ..---..... .......... ........-. .......... .......... 1561 .........- .......... .....--... .......... .......... .......... 1621 .......... .......... ......-... .......... .......... .....-.... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... --........ 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ...--..... 2221 .......... .........- .........- -......... .....-.... ..-....... 2281 .......... ....-..... ..-....... .......... .......... .......... 2341 ...-...... .........- .......... .......... .......... ---....... 2401 .-...-.... ....-..... --........ ....--.... .......... .......... 2461 .-........ .......... .....----- ----...... .----..... .......... 2521 ....-..... .......... ...-...... .......... >......... ...(...... 2581 ..)....|.. .....-.... .......... ........-. .....----( .....-.... 2641 ..)------- ---------- ---......- ---------- .......... ..(....).. 2701 .[.------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---....... .......... .......... .......... .......... .......... 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---....... .........- ---------- -------... .......... 3061 ...------- -----...-. .....----- -......... .......... ......-.-- 3121 -....-..-- --......-. ....-..... -]........ .......... .........- 3181 .......... .......... .-....-... ....-....- ..|.-..... .......... 3241 (....----- -----).... ...-...... ......---. .......... (........) 3301 ...--..... .......... .......--. .--------- ---------- ---(....-- 3361 --.).---.. ...-...... .......... .......... .......... --(....).. 3421 .....-.... -......|.. .|........ ........-. ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.|...--.. ..-....... .........- -......... ..GG--(ccu 3721 gcc)--CCUC G-CCC-|G-C GCCC-CCAAA CUCCG-AAGG |GCCGCcg-c -gccccgcc- 3781 -gcuggccug ggcggggc-g ggcg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-c g|gg-cggcg -cGU-GGGCC -CCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGGCGG(GA- CGAU)CCG-- GACGCCG--- GGCCAGG--G 3961 U|GCGC-CGC --C--GG-GG CCcgc----- ---------- -----g---- -GAACGGCGU 4021 C--GGCCGG- CCCGACA-GC UGGAAGGUGG CC(CCAG-AA GUC)GGCAUC CU|C(CAG)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGGCC GGC|CC-GGA AAA--UGGAG 4141 C--GCG-CC- GGAGCCCCG| G|-------- --ACCCGC-- --GCCCGGC| (- cgcg-)---- -cggcgGUUC GGGA------ 4441 --GGC|-CG- CA-GA-GG-- ------ccc- -c-g-gggg- c----g-cgA GGCG------ 4501 G-CGC(GCAG -)GCCCCGC- CGG|A-CCG| G--CCUCUG- GUGC-AGA-U CUCGGC|AG- 4561 CAGUAGCCGC -UACUCCG-- -(cgccc--- ---------- ---------- ---------- 4621 --)--CGGAG |GACUGAGGG G~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(-~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~-|-~~~ ~~~~~~~~-- ------~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~- ---------- ---------- ---------- ---------- -~~----~~~ 5341 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~-~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~-~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~-~~~~~~~~ ~-~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ -~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---~~~~~~~ ~~~~~~~~~~ 6601 ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~-~~~~ ~~~~~~-~~~ ~~~~~~~--~ 6661 ~~~~~~|~~~ ~~|~~~~~~~ ~~~-~~~~-- ---------- -~~~~~~~~~ ~-~~~~-~~~ 6721 ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~(~-~ ~)~~~~~~~~ 6841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~-~~~-~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- ~~~~~~~~~~ 7141 ~~~~~~~~~- ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~-~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~|~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~--~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ---------- ---~~~~~~~ 7741 ~~~~~~~~~~ ~~~|~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~- -~~~~~~~~~ ~~~-~~~~~~ ~~~~~-~~~~ 7861 ~~~~----|- ---------- -----~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~|~~~ 7921 ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~|~~~ ~~|~~~~~~~ ~~~-~~~|~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- -------~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8401 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~~ 8761 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ 8881 --~~~|~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.3 9262 bp RNA RNA 31-DEC-1994 DEFINITION Giardia intestinalis.; . ACCESSION U09492 KEYWORDS . SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 (bases 1 to 3818) AUTHORS van Keulen,H., Homan,W.l., Erlandsen,S.l., Shields,J.M. and Jarroll,E.L. TITLE spacer DNA sequences: evidence for two major subgroups of human Giardia Two types of Giardia lamblia small subunit ribosomal RNA and JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3830) AUTHORS van Keulen,H. TITLE Direct Submission JOURNAL Submitted (09-MAY-1994) Harry van Keulen, Cleveland State University, Biology, 1983 East 24th Street, Cleveland, OH 44115, USA STANDARD full automatic COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U09492 NCBI gi: 606646 BASE COUNT 17 a 68 c 59 g 6 t 9112 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGCCCC GCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G GCCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gcccg-(--- ---ccgcgug ---------- 361 ---------- ---------- ---------- ---------- ---------- --ccgc~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~---~~~ 481 ~~|~~~~~~~ ~~--~~~~~~ ~~~~~~~-~~ ~~~~~~-~-~ ~~~~~~~~-- --~~~~~~~~ 541 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~-----~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~-~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~-- ---------- ---------- ---------- ---------~ ~~~~~-~~~~ 901 ~~~~~~~~~~ --~-~~~-~( ~-~~~~~~~~ ~~)~~~~~-- ---------- -~~~-~~~~~ 961 --~~~~~~~~ ~~~~~-~~~~ ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~-----~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~------- ~--------- ---------- 1081 ---------- ---------- ---------- --------~~ ~~~-~~~~~~ ~~~~~~-~~~ 1141 ~~~~~~~~~~ ~~~~~~---~ ~~~~~~-~~- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~-- ---------- ---------- ---------- ~~~~~~~~~~ ~~~----~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1441 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~-~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.muris 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia muris. ACCESSION No information KEYWORDS No information. SOURCE Giardia muris. ORGANISM Giardia muris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X65063 Sequence of Giardia muris rDNA repeat. H. van Keulen small subunit: 2098 - 3527 5.8S: 3555 ~ 3676 large subunit:3733 - 6421 BASE COUNT 640 a 753 c 856 g 562 t 6451 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~u gagaugacgc gacccgguGG AUG|CCUUGG 61 |CUCGGGG|G A|-CGAUGAA GGA|CGUG(- -GCUG-AC)G |AC-GAUAcu cgaugu-|[- 121 gg-uccaa-- gcacgug--- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---acauc|G AUCUUC-GAA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 --------gg ---aucaucg -g-gg-uggu gg-------- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------uccc )---ccccca cuc-cgau-g aAG----AUG 481 AC|GGGUGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-AGGAGA-- --AGACACC( 541 AAC-C)GG-G AU|UCCUUGA UU---AGC(G GCGA)GCG-A U-----CCAG GAGU------ 601 ---------- ---------- ---------- ---------- -AGUCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -----accuc 781 gaagcg(aug ag-)cguugu ga-gg----- ---------- ---------- ---------- 841 acuggggg-- ---------- ---------- ---------- ---------- gaugu-ccua 901 aacccgaa-- --g-aug-g( g-(uugaaa- )c)cca-c-- ---------- --------AC 961 --|C(AAG)G |AGGG-(UGC CAGU)-CC-G UA|--gggau --ggacac-- -------aac 1021 cccaac---- ---------- -gac------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-ACCUCU GCU(----UG 1141 AGAG)-GUAG AGGGAA---- -gAGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGGUACC-- ---------- ---------- ---------- )CUU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGCC-CCGA GACCGAUAGA GGACCAAGUA GU(GCGA)A- 1441 C-GAAAGGUG -AGA-AGGAU GCC(gaccca )GGCA-cguC --AAAAG-AC CCUGAAcc-c 1501 gggag-gcg< -a----cucc cgaccugucg a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (-u-ga)ucg auuggucgg- >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGUU AGGACCGAUC GCGAGUC--- ---------( -------aug 2641 u-)------- ---------- ---------- ---------- ----GGCaaa gg(gaag)uc 2701 a-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ---------- -------gac uu(-caa-)g gg-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --gccc-(cu 3121 -uaca-a)-- --gggca--- ---------- -]-------- ---------- -GAGCGAUC- 3181 -GGU-CCUAG ACCCGAAAGG U-GGUG-AUC UACA-CUUG- AC|C-AGGGU GAAGCCAGAC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCA-UC---C CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGG UCGAGUUGAG UGUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUGGUAGC UGGUUACCUC CGAAAUGUCU --(CCCA)GG 3421 AUAGC-CGAC -AUC--a|-- -|-ugaac-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --agcuGCCC -U|AGG--UA AG-GC-CACG AUCGGUGGG- -----AGUAG GGAG--(guc 3721 a--)--CUCC U-UAU-|CCA CCCC-UCGAA CCAUG-AACA |AGGGUg--g -agcggggc- 3781 c-aacuugug ug-ggccccc ucaac----- ---------- ---------- ---------- 3841 ---------- ---------- ----agug-u u|GA-UGUCG -AGU-GGGCC -UCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-A AGACGG(GA- UGAA)CCG-- ACAGUCG--- GGGGAAG--G 3961 U|GUGGaagU --G--UA-UG CUcgau---- ---------- -----c---- -AAACGGUGU 4021 C--CGUCGAU CGUGACA-GC UGGAAGGUGG CC(UUAA-CA GUA)GGAAGC CU|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGAGG GGC|CC-GGA AAA--UGGAA 4141 C--ACG-CC- GAAGCAUAC| G|-------- --AUCGGA-- --ACCCGAC| (- ugug-)---- -ucuc-GGGU AGGA------ 4441 --GGU|-CG- UC-AU-GA-- --------u- -c-g-agu-- c------GAA GCCA------ 4501 U-GGG(GUGA -)CACGUGG- UGG|A-ucg| ag-UCAUGA- UUGC-UGA-U CUCGGU|AG- 4561 UAGUAGCCAU -UACUCC--- -(aucu---- ---------- ---------- ---------- 4621 --)---GGAG |GCCUGACGU G-GAG|AUGG GUU|CCGUAU CC-CUG(-UC GAU)CA|GAU 4681 ACGGGUGACA |-CGA-UCCU AAGU------ ---------- 4921 ----AC-GAU AGGGcugA-C CGG(UUAACA UC-)CCGGU| --G----gua ug-augg-gg 4981 --[------- ---------- ---------- -------u-- -c---uug(- -guga--)ca 5041 u--------- ---------- ---------- ---------- -----cc-u] uuc-acaacg 5101 guac-----a uga--acgaa gc-a-caug- -gu-ggga(G UCAUCCCG-) uccuac-|cc 5161 caguccccc- ---------- ---|---cau ggcc-aguag ---uac(uuc ag-)gucgug 5221 caugg-ccau g--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----augg-a uca------- 5341 ---------( --------)- ---------c au--gu---c -cuucg--gu cauC-CAUGA 5401 AAC-ccguug u<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -------g-- ---------- ----uccccc --cc-auc-- cu-ga-UCGU 5581 A|CC---ACA ACC(GCAACA )GG|ACU-CC AAGGU(GAUC A)GCCUCU-| AGGC--||g- 5641 gg-a--gAGA CC-AUGA-CU C-AGGGAAGU CGGCAA-ACU -AGCUCCGUA AC(CUCG)GG 5701 AGAAGGAGU| GGCUCUGA-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(ucg-a)-- ---------- ----->---- --------UC AGAACC|G(- --GCA)CGGA 6601 CcgAGGGAUC C|gCGACUGU CU(ACUAA)C AACAUAGCGU CGUG|C-CAG U|CGU(---c 6661 augg)AUG-- ---------- --A-GCGUAC ACGACGUG-- AUUUCUGCCC AGU|GCCAUG 6721 AC-CGUCAC- ---caugaa- ----(gagg) -----uucau ----CCAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 UAAUU)UCCG AC|GUGCAUG AAUGGAUCAA CGAGGAUCCC ACUGU-CCCA AGUCAUGCCU 6901 CC|guGAACC U|aca-gACC CG(GGAA-CG GG)CGGGUGU -U-GGU-CGG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AAUCC G---AUC-CU |GGGGGAUGG GAUCAUCGGU 7021 GCAGCAUACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-UUCCAUGA GA-UACCCUG |ACGUUGUU- -CACCA-UCC CACUCAc--- 7201 ---------- ---------| --g CACAC-GGUC G-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UAGAUCACA CG-)GCAG-G C|G|U|CCU- AUGGU-AAGC |UCAGU-GAG 7621 -G(UCG---- GAAA)CCUCA CGUGGA|GC( A|U--AAGG) GCAUAAG-CU U-ACUUGACU 7681 -AGUACC-(c c--ugucc-- )-GGUACUUG CCGU(-GAAA )GCGUGG|CC --UAA|CGA- 7741 UCCUUCA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- accG-CUC(- -CGGU-AauC C---)----- ---------- 7861 -----GAG|C gUGGAG-gug aC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(CCCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCAUG(CA -UC-)GGUGC GGAA-GCGU| CGGAU(UGUU C)ACCCGucu 8041 a-AGGGAUCG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUAUCCUACC GACC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->aucuc ca-ug-cg-U CCAGUACGUC GGGU(CAGUA 8281 C(GAGA)GGA AC-)ACCCGU C|GCGAGCCU CCGAu-cuCC CGG|-UUGUU U(GACU)UGA 8341 CAGUGCCGGU C-UGUCGC-- GC-UCGg--G GGACUAGCAC U(GAACGCCU C-U-A)AGUG 8401 UCCAUCCC-a CCUAc----- ucgc--augg g<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- -uugagggg( 8641 ---------- cuu------- --------)c cccucga--> --|------- ---------- 8701 -----uucgc |ccggg(-uu gacga)cc-c uuuuc---uc cga|ccuacu -gu-acggcg 8761 ug-g-agc-- ------(uuc uugcgacc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- guu|-ugguu c|-ggguugg c--auu-cc- -cc-ccg-ag 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS D.tigrina 9262 bp RNA RNA 03-DEC-1996 DEFINITION Dugesia (Girardia) tigrina.; . ACCESSION U78718 KEYWORDS . SOURCE Dugesia (Girardia) tigrina. ORGANISM Dugesia (Girardia) tigrina. REFERENCE 1 (bases 1 to 3387) AUTHORS Shimmin,L.C. and Tran,H.N. TITLE Characterization of the ribosomal RNA operon of the planarian Dugesia tigrina JOURNAL Unpublished (1996) STANDARD No information REFERENCE 2 (bases 1 to 3387) AUTHORS Shimmin,L.C. and Austin,D.J. TITLE Direct Submission JOURNAL Submitted (17-NOV-1996) Human Genetics Center, University of Texas Houston Health Science Center, 6901 Bertner Room S 250, Houston, TX 77030, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U78718 BASE COUNT 925 a 611 c 904 g 947 t 5875 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-UC AUUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AGGG AU|UUCCAUG GU---AGU(G GCGA)ACG-A C-----CUGG AAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacc g--aauccu- 781 -gugcc(uuu ---)g-guac u--aggaauu gugguguaa- agguu-gugu cuuua---uu 841 g--------- ---------- ---------- ---------- ---------- guuga-gugu 901 acucc-aa-- --a-uuc-a( c-(uugauu- )g)uga-u-- ---------- -aa---agUC 961 --|C(AUA)G |AGGG-(UGU UAGA)-CCCG UG|--ggagu augcgaggcu u-----uua- 1021 ---------- uugacgc--u uccuau---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGAUU GCU(----UG 1141 AGAA)UGCAG UCCAAA---- UCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CUUGU-GUGA GUCCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(GA-AG- )AGAG-AGUU A-AAUAGUAC G-UGAAAU-C 1501 GCUUA-GAG< gu---aaacg agugg-agcc gaagcuggug uauggaauuc aguuguuugu 1561 auuuuauucg gauuuggaua caaauuuuuu ugaaagugcc cggauucgau uuuuuacuuu 1621 uacaaucaau gcacuuucca uacaccaaaa cugcgaccaa uagaacgguu ucucugucgu 1681 uuggggaagc ugaccaguuc uucggaaucg guuguauagc ccugagcacg guugaaucca 1741 uguauuggua uuggcgauuu gcaaauuuug auugauuauc gauguuggug guucggauuc 1801 gagcucuuuc cgagaucggg uuugauu--- uguugauguc guagauuauc aaaguguaaa 1861 uccaaagucu gcagugu--- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -------aua 2521 uguagguu-- --------a- ---------- --ccuacuug >------UCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUU UUAUAUGAUC GCGAGUCa-a agggc----( --uuuacgaa 2641 a-)------- ---------- -----cccc- ---------- --acGGCGAA AU(UAAU)GU 2701 A-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---aagguuc au(uucg-)g ugagcu---- ------guga ugugaccuug 2941 u--------- ---------- ---------- ---------- ---------- ---------c 3001 cgg------( ----uuuuc- ----)----- -------ccg gacgagugca acauc----- 3061 ---------- ---------- ---------- ---------- ------aacc cgucugaagg 3121 ug-(u-ucg- -)-caucu-- -ggg-cggag u]-------- ---------U UGAGCGAUC- 3181 -GUG-UAAAG ACCCGAAAGA U-GGUG-AAC UAUG-CUUG- UG|C-AGGUU GAAGUCAGAG 3241 (GAAA----- -----)CUCU GAU-GGAGGA CCG-CC---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGGACAUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GUUU--|-- -|-augau-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------ucc 3661 guaguUGAAC -C|AGG--UA AA-GCGAAUG AUUAGAAGU- -----auugg gggc--(gaa 3721 au-)--gcuc u-caa-|CUU AUUC-UCAAA CUUUA-AAUG |GGUUCGAag -ug-cgccu- 3781 cucuuuaaua uuuuuguugg agguguacau ---------- ---------- ---------- 3841 ---------- ---------- --cgAAUA-c A|AA-UGCCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGUGG(GA- UGAA)CCA-- AACAUCC--- GGUUAAG--G 3961 U|GCCU-AAC A-U--CA-CG CUCAU-ga-- --------ga aaccac---- -AAAAGGUGU 4021 U--GGUUGAU AAAGACA-GC AGGACGGUGG AC(AUGG-AA GUC)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACA AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GUAGCGUGG| G|-------- --ACCUAU-- --ACCGGAU| (- -----)-acg auacc-gUGU AGGA------ 4441 --AGG|-UG- CU-GU-GA-- --------U- -U-G-CCA-- A------GAA GCAU------ 4501 U-AGC(GUGA -)GUUGGUG- UGG|A-GCG| G--UCACGG- GUAC-AGA-U CUUGGU|AG- 4561 UAGUAGCAAU -UAUUCAAG- u(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GU AUU)UG|AAC 4681 AUGGGUUAGU |-CGG-UCCU AAGC------ -(----)<-- --gaucu-gg uaauuc-agu 4741 uaucagaagg aggugauuga caaguaaaa- -------uug ucugauuuuu uuuu-aguag 4801 ccuccugaa- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C AGG(UUAACA UU-)CCUGA| -AC----uug a--------- 4981 --[auacgga aauuugguua uuucgguaac acaag----- -----gug(- -guaa--)ca 5041 c--------- ---------- ---------- ---------a ag-------] cga-ucucag 5101 agac-----g uca--ucaag ug-u-uucg- -gg-aaga(g uucucuuu-) ucu-uu-|gu 5161 auacauac-- ---------- ---|------ ---caugucc ----cu(aga auc)ag-g-- 5221 -uuaucu--- ---------g gagaaaggga ugu------- ---------- ---------- 5281 ---------- ---------- ---------- --------g- ----aaau-g uca-----aa 5341 agcaccgcg( -guucu--)u gugguguc-c gaag-----c -gccccuggu ggcc-cuuga 5401 aaa-ucugag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- --ggagca-- ---------- ----guuaua aauuucgu-u uc-aagCCGU 5581 A|CC--GAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAGC A)GCCUAU-| AGUCU-||-- 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-AUU -AGAUCCGUA CC(UUCG)GU 5701 AAAAGGAUU| GGCUCU---A GG-------- -(-----)---- ----CCU--- AGAACU|G(- --GCA)UGGA 6601 CUAGAGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGCG|a--ug g|CUG(---g 6661 ugaa)CGG-- ---------- --C-UUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCCAUG 6721 AA-UGUCAA- ---ugugaa- ----(gaaa) -----uucaa ----UCAAGC G|CUGGUUAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UCA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GUGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC U|aca-gCCA AG(GGAA-CG GG)CUUGGAA -U-GUA-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAGGAAA CAUUAAAGGU 7021 GUAGUAUAAG UGGGAGAC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 --------GU C-AGCAAUGA AA-UACCACU |ACUUUGAU- -CGUUU-CUU UACUAAC--- 7201 ---------- ---------| -- ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Tre.agilis 9262 bp RNA RNA 11-SEP-1997 DEFINITION Trepomonas agilis.; . ACCESSION AF015455 KEYWORDS . SOURCE Trepomonas agilis. ORGANISM Trepomonas agilis. REFERENCE 1 (bases 1 to 4294) AUTHORS Morin,L. TITLE of the nucleotide signatures in relation to other diplomonads, Microsporidia and trichomonads The phylogeny of basal eukaryotes: I. The ribosomal cluster of the free-living diplomonad Trepomonas agilis: secondary structure of the 18S, 5.8S, and 28S molecules, and analysis JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 4294) AUTHORS Morin,L. TITLE Direct Submission JOURNAL Submitted (22-JUL-1997) Biologie cellulaire 4, Universite Paris-Sud, Orsay 91305, France STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF015455 BASE COUNT 769 a 538 c 695 g 688 t 6572 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~aaa auuaucaUGA GUAUCAGUGG AUC|CCUAGG 61 |CACAGAU|A U|-CGACGAA GAG|CGUU(- -AAUC-AA)A |GC-GAAUuu u-guug-|[- 121 cuaucaauc- uuagcuuaau gcga------ ---------- ---------- ----a--]-- 181 ---------- ---------- ---uaguc|A AUACUC-GAA Uacu(-uca- )gg-c|auuu 241 au-------- -(-------- ---------- ---------- -----gcac- ---)------ 301 ---a-ugugu u--ucagcgu -u-------- ------(------GCC CGU(CUUGAA 2581 AC)ACGG|AU UAAGG-AGUU ACUUUACAUU GCGAGCCa-a cacgu----( -------gau 2641 aa)------- ---------- ---g-cgug- ---------- --agggcgua GA(GAAA)UC 2701 U-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------G 2881 ----auuuau ucaauca--- --ugccgcua uagggaga(u uua)ucgaac uauagucuca 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------- -UAGUAAUG- 3181 -UGA-UGUAA ACCCGAAAGG U-AGUG-AUC UUUA-UCUA- GC|UgAUACC GAAGCCGGUC 3241 (GAAA----- -----)GGUU GGU-GGAAGG UAG-CC---G CA-GUACUGA (CGUGCAAA) 3301 UCG-U-UUGU CGGAGCCGGA UAAAGGGucG uc-------- ---------- --c(GAAA-- 3361 --G)A---CU CAU-CGAACU AC--aGUAGC UGGUUACGUU CGAAAUUUCU --(CUCA)GG 3421 AUAGC-AACA -ACA--A|-- -|-uannnnn ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------GCAG -C|-gg--ua GA-GAGAAUG AUUGGUAGA- -----uagug gaac--(cua 3721 ---)--guuc u-gca-|CUA ACUC-UCAAA CUCCG-AAUA |GCUGUga-a -cauugguac 3781 uaccgcaaga gua-gcuauu guc------- ---------- ---------- ---------- 3841 ---------- ---------- ----gagcaa U|CG-UUGUU -AGU-GGGCC -ACU-CUGG( 3901 G-UAAG)CCG GAU-UGGC-A AGGAGG(AU- UCAG)CCU-- UAAGUCA--- GGUUACG--G 3961 U|GCGC-AAC --A--AA-GG Cgcau-ga-- ---------- --gacu---- -AAACGACGU 4021 A--UGUUGAU GUUGACA-GC AGGAAGGUGG CC(AUAA-AA GUC)GGAAGC CU|C(UUA)G 4081 |GAGUGU(GU UACU)AC|-- -UCACUUGCC -GAAUCAAUA UGC|UC-GGA AAA--UGGAU 4141 C--GCG-CU- ACAGCCUUU| G|-------- --ACCUAC-- --ACCUGAC| (u cuugu)-guu gUGCU-AGGU AGAA------ 4441 --CGU|-GG- UG-GA-GA-- --------G- -C-G-CUU-- U------GAA GCCU------ 4501 U-UGC(GUGA -)CGUCAGG- UGG|A-gca| c--UCUCUA- AGUC-CAG-U CUUAAU|UG- 4561 AAGUAGUGCU -UAGUCCA-- -(acua---- ---------- ---------- ---------- 4621 --)--UGAAC |CACUUACC- G-GAG|AAGG UUU|CCAAGG CC-ACU(-AA AU-)AG|UCC 4681 UUGGGUUACU |-CGG-UCCU AAGc------ -------<-g uu-acu(--g aac-)g-cca 4741 cuuaaacg-- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----uC-GAA AGGGA-AG-U AGG(UUAAAA UU-)CCUAC| aAG----gcu ca-caua--- 4981 --[------- ---------- ---------- ---------- -u---gcg(- -gcga--)cg 5041 cg-------- ---------- ---------- ---------- ---------] --ugugcuuc 5101 ucau-----u ga----guuc cg-aucggu- aucccugg(G CUUUCGUC-) ccaguc-|ug 5161 a-uguaaucu cuaguugcga agcaguagag ucuu-uc--a ----gc(gua uc-)gcu-a- 5221 gagaa-gaca guaua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- --------ca 5341 ggaaggcag( -uguauu-)c ugcuuguu-g aaccaguu-u -ggaac---- ucgcuaaaaa 5401 aug-ggaauc g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ------cgcu a-au-ugu-- ga-gcaCCGU 5581 A|CUaaguaa ACC(GCAUCA )GG|UCU-CC AGGUU(AAGC -)AACCuca| AGUG--||A- 5641 GA-A--GAUA GC-GUGA-GC G-UGGGAACU CGGCAA-AAU -AGCUAUGAA AG(UUAG)CG 5701 AAAAAUAGU| GGCUCUGAA- ---------- --------<- cguucgucca agggca---- 5761 ---------- ---------- ---------a aaucauagaa gaugug---u gagagcgcug 5821 guggagca-a sus-uuugcg cu-ggaacuu cg-------- ---------- --gaagggug 5881 gagaucu--- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------g -cgggcaaac aucau>---- -------uuu agaac-|G(- --CUU)CCAG 6601 CUAGGAGAAU C|-CGACUGU AU(AAUUA)A AACAUAGUUA AUGG|A--CU G|uca----- 6661 cugc-agg-- ---------- --U-GCAGUU CAUUGUUG-- AAUCCUGCCC AGU|GCUAUG 6721 AC-UGUUAA- ---aaucga- ----(gaga) -----uugau ----UUAAGC U|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUU|U (UAA)GGUAG CCAAAUGCCU C|GUCCA-G( 6841 UAAUU)UUGG AC|GUGCAUG AAUGGAUUAA UGGGGUUCUC ACUGU-CCUC GCUCACAUCU 6901 UC|GCGAAAC C|aca-gACU CG(GGAA-CG GG)CGAGUgc uacUCU-CAG CGGGGCAAGA 6961 AGACCCUGUU G|AGCUUGAC UCC-|AGCUU U---GGAACU |GUAGAACGG UGAUGGUGGU 7021 AUAGCGUACA GGGgaga--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -uucg)---- 7141 ---------u c-aacaaugu aa-caCCCUG |ACACUAUU- -CAUUG-UUC UGCUAAc--- 7201 ---------- ---------| --g -ACAC-UUCU A-GGUG-GGG AG-UUUGUCU G(GG-)CGGA 7561 GaC|GCCUGC (UAAAGUUUA AC-)GCAG-G A|G|U|CCA- AUAGU-AAGC |UCAGU-AUA 7621 -U(UCA---- GAAA)UUAUA CGUAGA|GC( A|A--AAGA) GUAAAAG-CU U-AUCUGACU 7681 -GAGUUCA(u c--agugg-- )UGAACUCAG ACGU(-GAAA )GCGUGG|UC --UAU|CGA- 7741 UCCUUUAc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -aua-ugc(- -AUGU-A--A U---)----- ---------- 7861 -----GCA|U CUAGAG-gug aC|aGA--AA AGUnnnnn|n nnn|nnnnnn nn|nnnnnnn 7921 nnnnnnnnnn n(nnnnn)nn nnnnnnnnnn nnnnnnnnnn nnnnnnnn|n nn-n|n|nnn 7981 nn|nnnn|nn n-nnnnn(nn -nn-)nnnnn nnnn-nnnn| nnnnn(nnnn n)nnnnnnnn 8041 n-nnnnnnnn nnnnnnnnnn nnnnnnn--- ---------n nn(nnnn)nn nnnnnnnnnn 8101 nnnnnnnnnn nnnn---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-nnnn nn-nn-nn-n nnnnnnnnnn nnnn(nnnnn 8281 n(nnnn)nnn nn-)nnnnnn n|nnnnnnnn nnnnnnnnnn nnn|-nnnnn n(nnnn)nnn 8341 nnnnnnnnnn n-nnnnnnn- nn-nnnn--n nnnnnnnnnn n(nnnnnnnn n-n-n)nnnn 8401 nnnnnnnn-n nnnnn----- nnnn--nnnn n<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~)~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Entamo 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS E.histol.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Entamoeba histolytica. ACCESSION No information KEYWORDS No information. SOURCE Entamoeba histolytica. ORGANISM Entamoeba histolytica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X65163 ID EHRRNA standard; RNA; INV; 6331 BP. XX AC X65163; XX DT 25-APR-1993 (Rel. 35, Created) DT 25-APR-1993 (Rel. 35, Last updated, Version 2) XX DE E.histolytica rRNA XX KW 18S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-6331 RA Bhattacharya S.; RT ; RL Submitted (17-MAR-1992) on tape to the EMBL Data Library by: RL S. Bhattacharya, Jawaharlal Nehru University, School of RL Enviromental Sciences, New Dehli, 110067, INDIA XX RN [2] RP 1-6331 RA Ramachandran S., Bhattacharya A., Bhattacharya S.; RT "Nucleotide sequence analysis of the rRNA transcription unit of a RT pathogenic Entamoeba histolytica strain HM-EIMSS"; RL Nucleic Acids Res. 21:2011-2011(1993). XX FH Key Location/Qualifiers FH FT source 1..6331 FT /organism="Entamoeba histolytica" FT /strain="HM 1-IMSS" FT /dev_stage="trophozoites" FT /clone="p(ssrnag),pHM-a,pLSrnaE1,plsrnaE2,plsrnaE3" FT /isolate="Clone-6" FT rRNA 522..2467 FT /product="18S ribosomal RNA" FT misc_feature 2468..2590 FT /note="transcribed spacer sequence 1" FT rRNA 2591..2740 FT /product="5.8S ribosomal RNA" FT misc_feature 2741..2865 FT /note="transcribed spacer sequence 2" FT rRNA 2866..6331 FT /product="28S ribosomal RNA" XX SQ Sequence 6331 BP; 2415 A; 813 C; 1302 G; 1792 T; 9 other; BASE COUNT 1355 a 480 c 744 g 1036 t 5647 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~AAAU AUUACUUUGG AUA|GUUUAG 61 |UUUCCUG|G G|-CGAUGAA GAA|CGCA(- -AUGA-AU)U |GC-GAUAAG UG-auag|[- 121 gaacaauaaa a---ugugaa ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaucc|A AAAUUU-GAA Ugcu(ugaa- )ag-u|auac 241 uua-----ug a(-------- ---------- ---------- -----acu-- ---)uc---- 301 --aa-gguau ---auaugau -a-uu-caau auc---(--- -----c---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- )---gauuug agu-aucg-u aAG----AGG 481 AC|UCCCUUA -A--CU|UA( AGCA)UA-UC AAUAAG-G-G A-AGGAAG-- --AAAAAAU( 541 AAC-A)AU-G AU|UUCUUAA GU---AAU(G GCGA)AUG-A A-----AAAG AAAA------ 601 ---------- ---------- ---------- ---------- -AGACCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---aguugau aagaauggau --aauuguaa a--aggguua gaagaauaca (gcaa)ugua 781 ugaggcuagu cu-uaaauua uu-cagagug uaacuaau-- agaaaagcua uauuu----- 841 --aaaagg-- ---------- ---------- ---------- ---------- gauaa-uuua 901 aauu-gaa-- --u-uca-g( a-(acgaau- )a)uug-a-- ---------- --------GC 961 --|C(AGA)G |AGAG-(UGA AAGC)-CUCG UC|--aauuu agauauaucu u-----gaaa 1021 agaau----- -augguuu-a gaaaa----- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-Aaauuu auU(----UG 1141 GAAG)Uauaa aucGAA---- -aaGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUaguauu-- ---------- ---------- ---------- )CAU-CAAAG UCU----AAA 1381 UA-------- ---------- UUACA-GGAA AACUGAUAGC AAAG-AAGUA CU(GUGA)A- 1441 G-GAAAACUU -AAA-AGAAC UUU(gg-aa- )AAAG-AGUG --AAAAGAGC U-UGAAAG-A 1501 GUAAU-AUG< ug---aacgg auaauuuaua agaaaaau-a guggaa---- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- -uauguuaua aauaaagaug ugaaaagauu agauauauau aag--uagua 2221 uauuuaauaa gauuauguu- gaaauuuau- -aauauaaga aauuauuaag agcaa-gaga 2281 auuauuucau uuauagugau ua-uuaauaa acgaggauau uagga(gaaa -)ucuuagua 2341 uucaauugug aauuaaaa-- ----guaaaa auccgauaau aau-ggaaug ---auaaaag 2401 c-uauuuaag guaa-gauua --auaaauuu aaucc----- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---cgagaau 2521 agaa-acu-- --------cu uga-agaa-g uaaauuaucu >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGGAU GCGAAUGa-g aauagc---( ------agga 2641 aa)------- ---------- ---g-cuau- ---------- --aacauGAA GA(GAAA)AC 2701 kA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ------aaaa cuauga--ga gugua----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gaaa-- ----)----- ---------- --ua-cauuu -agcaauagu 3061 a--------- ---------- ---------- ---------- -------ucu ---------u 3121 ucaau----- ---------- -------a-g a]-------- ---------A GAAGUAAAU- 3181 -AUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUA-CUUG- AA|C-GGAUU GAAGCCGAAG 3241 (-AAA----- -----)CUUU GGU-GGAAGA UUC-AC---G CA-GUGUUAA (CGUGCAAA) 3301 UUA-C-UUGU CAUAUUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACU AUCUAGUAGC UGGUUCCACC UGAAUAUUCC --(CUUA)GG 3421 AAGGU-CAAA -GUA--u|-- -|-uaa---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 --aguAUUGA -U|UGG--UA AA-GAUAAUG AUUAGGUGU- -----AAUGG GUGA--(gua 3721 uau)--UCAC U-CAA-|CAU CUUG-UCAAA CUAUG-AAUA |AACAAAgaa -gaauucuc- 3781 aguguuaaau acacuucagg aauuuaaaua ---------- ---------- ---------- 3841 ---------- ---------- ----uaaac- a|UA-CUUUG -AAU-CGGCC -AAG-UCUG( 3901 G-UAAG)CAG GAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUCG--- AGAUAAA--G 3961 U|GCCA-AAA --A--GA-AA CAUAA-cg-- --------ag uaccac---- -AAAAGGUAU 4021 U--CAUUCAU AUUGACA-AU AGGACGGUGG CC(AUGG-AA GUC)GGAAAC CG|C(UAA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCUAUC -GAAUGAAUG AGU|CC-UGA AAA--UGGAU 4141 G--GCA-UU- AUAAUUUCU| U|-------- -aACUGAU-- --ACUCGAC| (- -----)cauu uuaac-gAGU AAGGaaacga 4441 aaUGG|-CG- UA-AG-GA-- -ca---acaa aA-G-Uag-- u------AAA GAUU------ 4501 U-AAA(GUAA -)UUUAGAU- UGA|A-ACU| G--UCCUUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UACUAAGA- A(gaggaaaa aaac------ ---------- ---------- 4621 --)AUCUUAG |AACUGAAGA G-GAG|AAAG GUU|CCUAAA CA-ACA(-UU ACU)UG|GAU 4681 UAGGGUGAAU |-CGA-UCCU AAau------ -------<-u acagau(-gg aa)auc-cuu 4741 a---agaaa- --uauauaag ugac------ ---------- (auaua---) guca-auaua 4801 agg------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----auuGAA AGGGA-AU-A AGA(UUAAUA GU-)UCUUA| -AU----caa ga-gaau-ua 4981 au[gauua-- ---------- ---------- aa-----u-- -c---uua(- -gaaa--)ua 5041 agauu----- --aaaucgaa ua----aaau g(guaa)cau a----uc-a] uga-acuuua 5101 aaau-----g gag--uguga aaau-cuac- -GG-AAGA(G UUCUCUUU-) UCUUCU-|UA 5161 A-caaaag-- --------ua aau|u---cc acug--aaau ----ga(auc aa-)ucaga- 5221 ga-ag-ugg- aauuu----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- -----auug- ----gcuu-u gUA-----AG 5341 aaAUUCAAC( -auaug--)A UUGAAUu--g ugguau---u -uuugc--ag ucuu-cauaA 5401 AAA-uuaaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 --ggaaucuu agcauaaagc uaau------ ----uaaaga --au-ucu-- uu-ugCUCGU 5581 A|CU--AAUA ACC(GCAACA )GG|UCU-CC AAGAA(GCAA A)AUCUUU-| AGUUA-||Aa 5641 UA-G--AAUA AC-GCAG-GU A-AGGGAAGU CGGCAA-CAU -AGCUCUGUA AG(UUAG)CA 5701 AGAAAGAGU| AGCUCUGGU- ---------- -(-----)---- -------AUC AGAACU|U(- ---UA)AAGG 6601 UUAGGGGAAU C|-CGACUGU UU(AAUAA)A AACAUAGCAU UCUG|A--UA A|AUC(---u 6661 aaaa)GGU-- ---------- --U-CAUUAC AGAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---gguaau- ----(gaaa) -----uuuac ----UUAAGC G|CGGGUUAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUCAC CGUGAUUCCC ACUGU-CCCU AUCUGCAAUC 6901 UA|GUGAAAC C|aca-gUCA AG(GGAA-CG GG)CUUGAUU -G-GAA-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AAUUU A---UCA--U |GUGAAAUCG AUUUUUUGGU 7021 AUAGGCUAGG UGGGAGAc-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- --uuu)---- 7141 --------gu c-AAACGUGU AA-UACCACC |ACUAGAAA- -UacUA-UUU CACUCAu--- 7201 ---------- ---------| --u GAAAG-AGAU A-GACG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UACAAGAUA AC-)GCAG-G U|G|U|CCA- AAGAU-GAAC |UCAAU-GAG 7621 -G(ACA---- GAAA)CCUCA UGUAGA|AU( A|U--AAGG) GUAUAAG-UU C-AUUUGAUU 7681 -AUUGAUU(c c--aguac-- )AAUCAAUAA CUCU(-GAAA )UGAUGG|CC --UAA|CGA- 7741 UCCCUAAGau uuuuaauuag aaagaauuua aaacauauua gauuuaucug augugugaga 7801 ccguaaggug auuucuaguu aauc-cuu(- -uaau-a--a u---)----- ---------- 7861 -----aag|g CUUGGG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(CUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCC|AU U-UCAAG(CA -GA-)AUUGA AAAA-AGGU| AUGAU(UGUU C)ACCAUUUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACC GUUUC-g-aaag ua-uu-ua-G AUAGUAGCAC AACU(CAGUA 8281 C(GAGA)GGA AC-)CGUUGU G|UCACGCCA CUGGAUUAUU CAA|-UUAUU U(GAUC)AAA 8341 UAGUGUUGAG A-AUCUAAC- AC-GUGU-uG AAAUAAUGGC U(GAAAGCCU CUC-A)AGCC 8401 AGAAUUUC-G UCUA-----g auga--auac u<---uuguc uuuuuc-u-u guuacuuuag 8461 uacaauugaa -aauuauaua cguuguauuu auuaucucgu gu-------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---auuacuc uaucaaaagg guagugaa-- 8641 ------uacu gaguua-aca a--------- aauuuaaag> --|------( ---)------ 8701 cauaacuguu |gcuua(-ua gacga)ug-g cauc-----a gaa|aucggu g---uwguaa 8761 gc-u-unnnn nn-nn----- ---------- -----nnn-n nnn--nnnnn ---------- 8821 -------nnn nnnnnnnnnn -nn|n-nnnn -|----nnnn n--nn--nn- nnn-nnnnnn 8881 n----|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.histol.2 9262 bp RNA RNA 15-SEP-1989 DEFINITION Entamoeba histolytica. str. HM-1:IMSS; 25S ribosomal RNA; ribosomal RNA. ACCESSION M21126 J04003 KEYWORDS 25S ribosomal RNA; ribosomal RNA. SOURCE Entamoeba histolytica. str. HM-1:IMSS. ORGANISM Entamoeba histolytica. REFERENCE 1 (bases 1 to 273) AUTHORS Huber,M., Koller,B., Gitler,C., Mirelman,D., Revel,M., Rozenblatt,S. and Garfinkel,L. TITLE Entamoeba histolytica ribosomal RNA genes are carried on palindromic circular DNA molecules JOURNAL Mol. Biochem. Parasitol. 32, 285-296 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M21126 Draft entry and computer readable copy of sequence [1] kindly provided by M.Huber (10-24-88). NCBI gi: 158981 BASE COUNT 94 a 40 c 62 g 77 t 8989 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~G ACCCGAAAGA U-GGUG-AAC UAUA-CUUG- AA|C-GGAUU GAAGCCGAAG 3241 (GAAA----- -----)CUUU GGU-GGAAGA UUC-AC---G CA-GUGUUAA (CGUGCAAA) 3301 UUA-C-UUGU CAUAUUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACU AUCUAGUAGC UGGUUCCACC UGAAUAUUCC --(CUUA)GG 3421 AAGGU-CAAA -GUA---|-- -|uuaa---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 --aguAUUGA -U|UGG--UA AA-GAUAAUG AUUAGGUGU- -----AAUGG GUGA--(gua 3721 uau)--UCAC U-CAA-|CAU CUUG-UCAAA CUAUG-AAUA |AACAAAgaa -gaauuc~~- 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~-~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|-~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------- ---------- ---------- 5281 ---------- ---------- -------~~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~-~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~--~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5821 ~~~~~~~~-~ ~~~-~~~~~~ ~~-~~~~~~~ ~~-------- ---------- ---~~~~~~~ 5881 ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~>~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~-- ---------- --~-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~- ~~~|-~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Euglen 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS C.fascic.1 9262 bp RNA RNA ~?~???? DEFINITION Crithidia fasciculata. ACCESSION No information KEYWORDS No information. SOURCE Crithidia fasciculata. ORGANISM Crithidia fasciculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Y00055 BASE COUNT 1043 a 934 c 1146 g 957 t 5182 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U C|uCGUUGAA GAA|CGCA(- -GUAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauucaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccg|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uuuu- ---)gaguca 301 uccc-cgugc ---augccau -a-uu-cuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--gAGC(G GCGA)GCG-A A-----GAGG GAAa------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuacaa )---ggccuu gaguuguggc aaugauauca 781 ---------u uu-cgugguu gg-ugcagga auggcgaaau ucaagcgcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaua ------aacc 1021 ugagcgccuc a---ugaa-c uguauuaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G UUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CUAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuucg-u ------uuuu gccagaacca 1561 gcccuacu-- -------gca u--uaucucg ucgga(cguc aaac-)ucc- ggcgggcaac 1621 g---aagugc aagaacaaac au-ugggugu uggug----- aaaugggcgg aguauauggg 1681 cugugcacgg c-(gcaa--- ----)-gccg cgagcacggu uucuucucu- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-ucuc--- caugcuggcg 2521 -cag------ ---------- aaa-aug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----CUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accguacc- 3781 uuagccaacu ---------- ----gcaagg u---cggaaa gaaaag---- ---------- 3841 ---------- ---------- ----AAUuag a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGCCCAA| U|-ua-guga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-C UG-GA-GG-- --------u- -c-A-GGa-- c------GAA GCUU------ 4501 AuGGC(GUGA -)GCCUAAGa UGG|A-CCG| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaga---- ---------- ---uau---a cucaacaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGaaacu gagc------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UAGA A)UGCUCU-| GGUAC-||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugac- ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUACGGCGA CAUCUGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCGA)---- 7141 ---------G C-ACAAAUGA AA-UACCACC |ACUCGGAA- -CGUUG-CUU UACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|AC( A|C--AAGC) GUAAAAG-CU U-GCUUGAUU 7681 aACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaagaauagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a cCAGAG-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UAGCU-ggcaGG CA-UC-gu-G AGGGAAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUAGUUUCUG GGG|-UUUGU C(GAAC)GGC 8341 AAGUGCCCCG A-AGCCAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAGCCA-A UCCC-aa-ga ccaG--AUGC C --|------( ---)------ 8701 -acaacgucc |cucuc(-ca aacga)ga-g aauau----g cau|gggcug gcaugagc-- 8761 -g-g-caugc uu-ca----- -cuccggugg ggcucgag(g ggca)cuu-a cgucccgagg 8821 cgc---ugaa ----ccuug- agg|-ccuga -|--aauuuc a--u-g-cuc ug----g-ga 8881 cuaaa|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.fascic.2 9262 bp RNA RNA 30-SEP-1988 DEFINITION Crithidia fasciculata.; 28S ribosomal RNA. ACCESSION M19223 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Crithidia fasciculata. ORGANISM Crithidia fasciculata. REFERENCE 1 (bases 1 to 409) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J .-P.P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19223 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 176247 BASE COUNT 121 a 84 c 113 g 90 t 8854 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~nca )--gac-cug agu-gugg-c agg----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--gAGC(G GCGA)GCG-A A-----GAGG GAAa------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuacaa )---ggccuu gaguuguggc aaugauaucc 781 ---------u uu-cgugguu gg-ugcagga auggcgaaau ucaagcgcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( c-(-guga-- )u)auuga-- ---------- --------GC 961 --|C(CAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaua ------aacc 1021 ugagcgccuc c---ugaa-c uguauucaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G UUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CUAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGU~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.vivax 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma vivax.; . ACCESSION U22316 KEYWORDS . SOURCE Trypanosoma vivax. ORGANISM Trypanosoma vivax. REFERENCE 1 (bases 1 to 4645) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 4645) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22316 NCBI gi: 1040857 BASE COUNT 458 a 650 c 671 g 350 t 7133 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCCG|G U|uCGUUGAA GAA|CGCA(- -GCAA-AG)C |GC-GAUAGU ugguau-|[- 121 gaccugcaga a-ccacucga u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccc|A GUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagcagcc c(-------- ---------- ---------- -----cccg- ---)ggguca 301 uccc-cgugc ---augccgc -a--gucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gcgg-c agg----ACC 481 AC|CCGCCAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCCCUCA GU--cAGC(G GCGA)GCG-A A-----CAGG GAca------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----cugcc gaaucgcgcc ---(ucaag- )---ggcgcc gaccuguggc acgcaacgcg 781 gcgcac-gg- --------cu gg-cagcggc gcggcgcaau ucaagcgcaa agcaaa--cg 841 cguugcug-- ---------- ---------- ---------- ---------- -------gcc 901 a----caccc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AGG)G |AAGG-(UGA GAGC)-CCAC UG|-caccgc cgccccccgc c-----gcca 1021 ccgcgcgccg cccacc---- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G C-GGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGC-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------CA GAGCG-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GCGACAACG< ac---aaugg aagcgccucc c--ucaca-c cggccagccc cgcgccccca 1561 ccucauccuc ugugccagcc acuccgcgcg gggcagcauc cgcgcggcag cggcacaccc 1621 ggggcgcggg cgagccugcg gagcgugggg cgcgucgaca cgcggcgugc ccgcucc--- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gcg cccucuc--- ggcgcuggcg 2521 -acg------ ---------- gcg-acgg-- -ggcgccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggc-a gaggc----( a-cgc-cuca 2641 g-)------- ---------- -gcc-ucuc- ---------- --cgcccGCA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -acgcgcucc -gcguccgu- ggcgcgcgca c--------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ------gcgu gcucagcgcc gg-cc----- 3121 --ggc-cccc cgcg------ -gg--cugcg c]-------- ---------U CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGC GAAGCCCGGG 3241 (GAAA----- -----)CCCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-gccg--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-c)--AGCA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAGCgcg cgcgcccuuc 3781 gc--ccgcc- ---------- ------gcaa gg--gcgcgc cucggccgag ---------- 3841 ---------- ---------- ----uuauug g|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCC-- GUUAGGG--- AUAUGUG--G 3961 C|GUCC-AAG C-uuccG-GG CUCAUucu-- ------cgau acguaa---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACAUGU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CCA AAA--UGGAU 4141 G--ACG-CU- CAAGcccga| c|-ac-gcga ugGCCCAU-- --UAUUCCU| (- -----)gccc cucca-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -cag-g-c-- c------GAA GCCG------ 4501 AUGGC(GCGA -)GCCGCGg- UGC|A-ccg| G--CCCCCA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAU -GAUCCAAC- G(gcacgca- ---------- ---------- -cacgcacac 4621 aa)CGUUGGA |UGCUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGacaCU GAGC------ -------~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Leptomo.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Leptomonas.sp. ACCESSION No information KEYWORDS No information. SOURCE Leptomonas.sp. ORGANISM Leptomonas.sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19409 LOCUS TRLRR24S 993 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Leptomonas sp. 24S ribosomal RNA alpha subunit ACCESSION L19409 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Leptomonas sp. rRNA. ORGANISM Leptomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 993) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>993 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..993 /organism="Leptomonas sp." /sequenced_mol="rRNA" BASE COUNT 277 a 214 c 289 g 213 t ORIGIN BASE COUNT 277 a 214 c 289 g 213 t 8269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccaacccua 1561 cu-------- -------gca u--ua-ucua ccggg(gguc aaaa-)ucc- ggugggcaac 1621 g---aagugc aagaacaacc a--ugggucu uggug----- aaaugggcgg aguuauuggg 1681 cuaugcacgg c-(gcaa--- ----)-gccg cgagcauggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- cauguuggcg 2521 cau------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----CUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accguacc- 3781 uuagccaacu ---------- ----gcaagg u---cggaaa gaaaagaauu aa-------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(GA- UGAA)CCG-- CUUAGGG--- AUAUGUG--C 3961 G|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.monterog 9262 bp RNA RNA 11-JAN-191 DEFINITION Endotrypanum monterogei. ACCESSION No information KEYWORDS No information. SOURCE Endotrypanum monterogei. ORGANISM Endotrypanum monterogei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19407 LOCUS ENORR24S 991 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Endotrypanum monterogeii 24S ribosomal RNA alpha-subunit. ACCESSION L19407 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Endotrypanum monterogeii rRNA. ORGANISM Endotrypanum monterogeii Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 991) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>991 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..991 /organism="Endotrypanum monterogeii" /sequenced_mol="rRNA" BASE COUNT 274 a 215 c 288 g 214 t ORIGIN BASE COUNT 274 a 215 c 288 g 214 t 8271 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccagcccua 1561 cu-------- -------gca u--uaucccg ucggg(gguc aaaa-)ucc- ggcgggcaac 1621 g---aagugc aaaaacuu-- ---ugggucu uggug----- aaaugggcgg aguauuugag 1681 cugugcacga c-(gcaa--- ----)-gucg caagcacggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuccau guuggcgau- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucuguu ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgugcc- 3781 uuagccaacu ---------- ----gcaagg c---cggaaa gaaaagaauu ag-------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACCGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS L.donovani 9262 bp RNA RNA 11-JAN-191 DEFINITION Leishmania donovani. ACCESSION No information KEYWORDS No information. SOURCE Leishmania donovani. ORGANISM Leishmania donovani. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19408 LOCUS LEIRR24S 993 bp ss-rRNA RNA 11-JUN-1993 DEFINITION Leishmania donovani 24S ribosomal RNA alpha subunit. ACCESSION L19408 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Leishmania donovani (strain HU3) rRNA. ORGANISM Leishmania donovani Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 993) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>993 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..993 /organism="Leishmania donovani" /strain="HU3" /sequenced_mol="rRNA" BASE COUNT 273 a 213 c 293 g 214 t ORIGIN BASE COUNT 273 a 213 c 293 g 214 t 8269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccagcccua 1561 cu-------- -------gca u--uauccug ucggg(gguc aaaa-)ucc- ggcgggcaac 1621 g---aagugc aagaauuu-- ---ugggucu uggug----- aaaugagcgg aguauuugag 1681 cugugcacgg c-(gcaa--- ----)-gccg cacgcacggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- cauguuggcg 2521 -au------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAgggAGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GGAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgugaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG AUUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgugcc- 3781 uuagccaacu ---------- ----gcaagg c---cggaaa gaaaagaaau uag------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGGa-- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Phytomo.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Phytomonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Phytomonas sp. ORGANISM Phytomonas sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19410 LOCUS PMNRR24S 981 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Phytomonas sp. 24S ribosomal RNA alpha subunit. ACCESSION L19410 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Phytomonas sp. rRNA. ORGANISM Phytomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 981) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>981 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..981 /organism="Phytomonas sp." /sequenced_mol="rRNA" BASE COUNT 278 a 205 c 282 g 216 t ORIGIN BASE COUNT 278 a 205 c 282 g 216 t 8281 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAAUG< ac---aaugg aa--guaccu ccauuuca-a cggccaaaa- -ccaacuccc 1561 ua------ua gcaaac-gca u--uaucccg gcagg(guuc aaaa-)ucu- gcugggcacc 1621 uuu----ugc guugucca-- ---ggaguca uggug----- -aaugggcgg agagua-agg 1681 ucagcguuca ag(uucg--- ----)cuugg ---cguuggc cuucuuc--- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-------- cauguuggcg 2521 -au------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaaa---( uuuca-acug 2641 aa)------- ---------- ---a-ucuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaacg -g-aucugu- ggugugcaca cguaaaa--- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------au gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUggAAG UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGU-CGGU -GCUu--|-- -|gauacaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CUG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAc-a aacug-ucc- 3781 uuagccaaau ---------- ----gcaagg a---uggaaa gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--C 3961 G|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGGCGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.culicis 9262 bp RNA RNA 11-JAN-191 DEFINITION Blastocrithidia culicis. ACCESSION No information KEYWORDS No information. SOURCE Blastocrithidia culicis. ORGANISM Blastocrithidia culicis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19404 LOCUS BLHRR24S 990 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Blastocrithidia culicis 24S ribosomal alpha subunit RNA. ACCESSION L19404 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Blastocrithidia culicis rRNA. ORGANISM Blastocrithidia culicis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 990) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>990 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" source 1..990 /organism="Blastocrithidia culicis" /sequenced_mol="rRNA" BASE COUNT 247 a 239 c 306 g 198 t ORIGIN BASE COUNT 247 a 239 c 306 g 198 t 8272 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGc)a- 1441 a-ggAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaggcugccu ccauuuca-g cggccagaa- -ccagcccgc 1561 agc------- -------gca ugcuc-ccug gcggu(gcuc ucggc)aucg gccgggugaa 1621 caaucagugc gggucgcg-- ---cgggucu uggug----- aaaugggcgg agauuc--ag 1681 ggcgcg-gc- --(accagcg cg--)---gc g--cgcgcu- ---gcucc-- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- caugcuggcg 2521 -aug-gau-- --------c- ccaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagcua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuc- ---------- --uuCUCGcg CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -acgcgaa-g -gc-uc-gu- ggugugcaca uucuauguga ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AGGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|gugacgac a--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-c)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcac -gccgcgcc- 3781 uuacccaucc a--------- ----ggaagg c---cgacga gaacagcauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAA-)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU A-GGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.gracilis 9262 bp RNA RNA 11-JAN-191 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X53361 BASE COUNT 876 a 1051 c 1244 g 881 t 5210 others ORIGIN 1 |--------- ---------- ---------- ------ACCU GUUGUGGUGG AUG|UCUUGG 61 |CCCAGGU|U C|-UGAGGAA GGA|CACA(- -gcagccu)U |GC-GAUACG UU-cggu|[- 121 gauacgcaga gucuugugau cugg------ ---------- ---------- ----aca]-- 181 ---------- ---------- --aaggaa|C AGCUUC-GAA Cgc-(aacug )-g-c|cagc 241 aagg-----g g(-------- ---------- ---------- -----uucc- c--)cc---- 301 -ccg-agcug ----ccugug -c-gc-cag- ------(--- --uguug--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----gugac )------cug gcg-caca-u gGA----AUG 481 AC|CCACCGA -A--CU|UA( AGCA)UA-UC ACUCAG-U-G G-AGGAAC-- --AGCAAGC( 541 AAC-C)UC-G AU|UGCUGCA GU---AAU(G GCGA)AUG-A A-----CGAG CAGG------ 601 ---------- ---------- ---------- ---------- --ACCCA|-- ---------c 661 ggcucuuccu gaaaaugggc uu//------ ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----cucga ucggcuuucg 781 uugg--(aau ---)----cc ag-caaaccc ugu-gggcua uggagcaguu ggcug---ug 841 ucucggug-- ---------- ---------- ---------- ---------- cuucc-cagu 901 accaaGAA-- --g-agu-c( c-(uggaau- )g)gaccc-- ---------- --------AC 961 --|G(AAA)C |AGGG-(AGA CUGU)-CCCG UA|--uggcu gaaccgugug c-----uggg 1021 aucacuggga uguggcug-g cuguaucccc ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGAGUG GCU(----UG 1141 GGAC)UGCAG UUUGAA---- gaGUGA-C(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGUAUCC-- ---------- ---------- ---------- )GUC-ACAAG GUG----GCA 1381 UA-------- ---------- CAGAC-CUGG GACCGAUAGU GCAC-AAGUA GA(GUGA)U- 1441 C-GAAGGAUG -CAA-AGAAC UCC(gc-ga- )AGAG-GGUU --AAAAGUCC C-UGAAGC-C 1501 GCAAC-AGG< au--cggugg ugugcagugc uguauc---- -//--ugacc aagcgucucu 1561 gggucagccc agggcuggcc accga--gcc ccugucuccg gacagggaug acuaucgugg 1621 cagccccgug guggcagcuc cgccug-cca ggaccuggag uuug---//- -ucgc-uggu 1681 gguugggcug gauucggggu gugcuuggcu gcaccggggg cugcaccguu cugacggugg 1741 uccccuugcu ggcugcaccg ucccccagcc ugaccccagu ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------gag aaauuggcag cagagcuugg 2461 caccccuccu ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ----ugcagu gcugcucucu >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CAAGG-AGUC UAAGGAGCUU GCCAGUCg-g auggc----- ugauc-caaa 2641 ac-------- ---------- ---c-ucuu- ---------- cugaGGCGUG GU(GAAG)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---cuauccu uccagau-gg gg-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuagu- ----)----- ---------- ------cucu --gcauggaa 3061 c--------- ---------- ---------- ---------- ------gacc gg-acccgaa 3121 gucc(--agu -)ggaca--g gguu-ucgag u]-------- ---------G CuuGCAAGG- 3181 -UCC-UUGGG ACCCGAAAGG U-GGUG-AAC UAUA-CCGU- UC|U-ACGGU GAAGCCAUGG 3241 (GAAA----- -----)CUGU GGU-GGAAGC CGG-UC---G CU-GUUCUGA (CGUGCAAA) 3301 UUGUG-UAGC CUGAGUGCGG CAUAGGG--G U--------- ---------- ---(GAAA-- 3361 --G)G---CC AAU-CGAGCC ACCUAGUAGC UGGUUCCCUU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGG -AUC--c|-- ---aaugaug caaagcuu-g ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- uaugug--ac 3661 u-gguUGCAU -C|CGG--UA AA-GCAACGC AUGAGAGGC- -caacccUGG GGAG--(ccc 3721 a-g)--CUCC U-CAA-|CCU AUCC-UCGAA CUGUG-AAUG |GGUGCGgac -aacccagg- 3781 caugcuucuu ugccacgaca ggaggcugug uaacagcagu -------ucu ---------c 3841 cccgucuucu gagcauguuc guugaacaau g|GA-UCCUA -CGU-GGACC -AUG-ACUG( 3901 G-UAAG)CAG UGC-UGGU-G AUGCGG(GG- UGCU)CCG-- AGAGCAG--- ACUUAca--g 3961 a|ucccgagu --G--CU-GG CUCAUacu-- ------caga ucccac---- -AAAGGAUGU 4021 U--GCUUACU ACGGAUA-GC AGGUCGGUGG CC(AUGA-AG GUU)GGAACC CG|C(UGA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCUGCC -GAAGUGCGC AGC|UC-CGA AAA--UGGAU 4141 G--GUG-CC- CAAGUCAGU| G|-------- ugucuCCCUU AcAGUCUGC| (- -----)-gca ucguu-gUGU AGAA------ 4441 -aGGG|-CA- UG-GA-CA-- --------a- -cag-cug-- a------ucg uGUU------ 4501 G-GGA(UUGA -)UCCCGGC- UUG|Aggcg| u--uGCCCA- GAGC-AGA-U CUUGGU|UG- 4561 UAGUAGCGAG -UACUCCAC- C(uggagagg a----gug(g caa)cacaac cccgcugugu 4621 gc)GGUUGAG |GACUGGAGU G-GAG|CAGG UUU|CCACAC CAaACA(-GC CGU)UG|AAU 4681 GUGGGUCAAC |-CGA-CCGU GAGC------ ---------- 4921 ----GC-AAG UGCGA-GC-A AGA(UUCUAC UG-)UCAUG| -GG----cua ga-ggu-ccc 4981 uu[cggguc- ---------- ---------- ---------- -g---gug(- -gcga--)ca 5041 cc-------- cc-caa-ggc ---------- ---------- -----ag-c] ccc-uccagg 5101 cauc-----g aac--cagug aa-u-cccc- -ug-ugga(G UUCUCGUU-) uccucc-|UG 5161 A-ugcagac- ------u-ca cgc|gggcua ucga-ucggc ----au(gac ag-)auggug 5221 gu-guaugcc cuuc------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gcu--c aGC-----AA 5341 gGCGGUGUG( -gucuc--)C ACACCGAU-g gcaaguggca gucacu--gg uucC-AAUGA 5401 ACA-gccuga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->---aggau ucucgugc-- ---------- ----cucagg --ac-ccu-- ug-uguCCGU 5581 A|CU-gCAUC ACC(GCAGCC )GG|UCU-CC UCGAC(UAGA C)GUCGCU-| UGUCC-||A- 5641 CG-G--ACGA AAUGCAG-CU A-AGGGAAGU CGGCAA-ACU -GGCCGUGCA CC(UUUG)GA 5701 AGAUACGGU| GGCUCCAGA- ---------- ------------ -------UGU GGAACU|G(- --UUG)CUGU 6601 GCAGGGGAAU C|-UGACUGU UU(AAUUG)A AACCCAGCUU UGUG|A--AG G|GAC(---c 6661 agcu)GGC-- ---------- --U-GGUUCC GUGAGGUG-- ACUUCUGCCC AGU|GCUCUG 6721 AU-UGUCAA- ---ugcgaa- ----(gaga) -----uucag ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAA-C( 6841 CAAUU)AUUG AC|GCGCAUG AAUGGAUCAA CGAGAUUCCU GCUGU-CCCU AGUCGCUGUC 6901 UG|GUGAACC A|aca-aCCA AG(GGAA-CG GG)CUUGGAU -G-UGU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCU-|AGUUU G---AUA-CU |GUGCAACAA CAUGUGGGGC 7021 GUAGCAUAGG UGGGAGGug- ---------- --<------- ---------- ----agugcc 7081 (a---//--- )ggugcg--- ---------- ---------- ------->(- -----)---- 7141 -------agC C-UGCAGUGA AA-UACCACU |ACCUUCAC- -CGUUG-UUU UACUCAu--- 7201 ---------- ---------| --a ACAUC-GAUC A-GUUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|GCCUUU (UACAACACA AC-)GAAG-G C|G|U|CCUG AAGCA-UUGC |UCAGG-CAG 7621 -A(ACA---- GAAA)UCUCC CAGGGA|GG( A|G--AAGG) CCAAAGG-UG C-UGCUGAUG 7681 -CUGCGAC(u cucaguac-- )GAGUCCGAA ACGU(-GCAA )UCGUGG|CC --UAA|CGA- 7741 UCCUUUGGuc aa-------- ---------- ---------- ---------- ---------- 7801 ---------- ---gugugcg a--a-uuc(- -uGGA-U--A Uc--)----- ---------- 7861 -----gaa|g CCAGAG-GUG UC|AGA--AA AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCUGCCAAGC G(UUCAA)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AGCU|UC CCACCCG(CA -GC-)CGAGU GGAA-GAGU| UGGAU(UGUU C)ACCCACCA 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUCCU GCCAC-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- gaug>---GG CG-UG-ac-A AUGGCAUCAC AUGG(UAGUA 8281 C(GAGA)GGA AC-)CCUUGU G|GCACUCCC CUGGUUUCCA CCG|-UGAGU C(GAGC)GAC 8341 UGGUGUAGUG A-AGCUACC- AA-GUGA--C GGAUACUGAC U(GGACGCAU CUU-A)AGCC 8401 UGAAUCCGAG ACCAggccua cagC--AUGC C --|------( ---)------ 8701 --ccaacacc |ccgcc(-ca gacca)gg-c ugg------- a-u|cugcg- gcgaguguaa 8761 gu-guucaga gguuau---- --//uguccg auccguug(a gcuc)caa-g gccgggcuuc 8821 ugcagggagu ggcuucggc- ugc|-cccug c|uggggccg a--ccu-gac aga-gugggu 8881 g----|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.caudat.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Bodo caudatus. ACCESSION No information KEYWORDS No information. SOURCE Bodo caudatus. ORGANISM Bodo caudatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19405 LOCUS BODRR24S 962 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Bodo caudatus 24S ribosomal RNA alpha subunit. ACCESSION L19405 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Bodo caudatus rRNA. ORGANISM Bodo caudatus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae; Bodoninae. REFERENCE 1 (bases 1 to 962) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>962 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..962 /organism="Bodo caudatus" /sequenced_mol="rRNA" BASE COUNT 267 a 210 c 274 g 211 t ORIGIN BASE COUNT 267 a 210 c 274 g 211 t 8300 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUAA)G- 1441 C-GAAAGUuu gAAA--GCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGACC C-UGAAAU-C 1501 GUGACAAUG< ac---aauga aa--gcaccu ccauuuca-u uggccagaa- -ccagcccgc 1561 aa-------- -------gca u--ua-uc-g cggg-(-ucc c----)-cc- ugc-ggcaua 1621 c---aagugc au-gguuu-- ---cggguau uggug----- --augggacc aggacc---- 1681 cgcggcaccc cc(caauaaa a---)ggggg cgagccgcgg cgucuuccc- cc-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------aag au--cucaaa ca-uuuggcg 2521 -aua------ ---------- ggaaaug--- gggugucuuc >------a-C CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaacu ------cau- ggugugcauu uuuu------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------aa acucaacacc ga-cc----- 3121 --ggc-ccga uuuuag---- -gg--uugag u]-------- ---------u cGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AGGGU GAAGCC--gg 3241 (GAAA----- -----)cuc- GGU-GGAGGC CUG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG-gUA AA-GCAAAUG AUUAGAGGA- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAGAaaa -cccg-acc- 3781 uucgcuagcu ---------- ----gcaag- u---cggaua aaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUc-uUCG( 3901 G-UAAG)CGG --C-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--AGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AAC-)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.caudat.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Bodo caudatus. ACCESSION No information KEYWORDS No information. SOURCE Bodo caudatus. ORGANISM Bodo caudatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19406 LOCUS BODRR24SA 980 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Bodo caudatus 24S ribosomal RNA large subunit. ACCESSION L19406 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Bodo caudatus rRNA. ORGANISM Bodo caudatus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae; Bodoninae. REFERENCE 1 (bases 1 to 980) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>980 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..980 /organism="Bodo caudatus" /sequenced_mol="rRNA" BASE COUNT 271 a 217 c 279 g 213 t ORIGIN BASE COUNT 271 a 217 c 279 g 213 t 8282 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGACC C-UGAAAU-C 1501 GUGACAAUG< ac---aauga aa--gcaccu ccauuuca-u uggccagaa- -ccagc--gc 1561 aa-------- -------gca u--ua-uccg cgggg(-ucc -----)ccc- ugccggcaua 1621 c---aagugc auugguuu-- ---cggguau uggua----- --augggacc aggacc---- 1681 cgcggcaccc cu(ucguaaa acaa)ggggg cgagccgcgg cgucuucccc cc-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------aag au-cuucaaa ca-uuuggcg 2521 -aua------ ---------- ggaaaug--- gggugucuuc >------a-C CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaac- -gcauccau- ggugugcauu uuuu------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------aa acucaacacc ga-cc----- 3121 --ggc-ccga uuuuag---- -gg--uugag u]-------- ---------u cGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCG GGU-GGAGGC CUG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGU CGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guauaua- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AGUG |UGCAGAaaa -cccg-acc- 3781 uucgcuagcu ---------- ----gcaaga u---cggaua aaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGGcG AUGCGG(AA- UGA-)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GCUAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--AGUGGAU uaGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.borreli 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanoplasma borreli. ACCESSION No information KEYWORDS No information. SOURCE Trypanoplasma borreli. ORGANISM Trypanoplasma borreli. REFERENCE 1 (bases 1 to 4645) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U39581 LOCUS TBU39581 984 bp rRNA INV 26-NOV-1995 DEFINITION Trypanoplasma borreli large subunit ribosomal RNA. ACCESSION U39581 KEYWORDS . SOURCE Trypanoplasma borreli. ORGANISM Trypanoplasma borreli Eukaryotae; mitochondrial eukaryotes; Euglenozoa; Kinetoplastida; Bodonidae; Trypanoplasma. REFERENCE 1 (bases 1 to 984) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. TITLE Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa JOURNAL Unpublished REFERENCE 2 (bases 1 to 984) AUTHORS Lukes,J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) J. Lukes, Institute of Parasitology, Dept. of Molecular Parasitology, Branisovska 31, Ceske Budejovice, 37005, Czech Republic COMMENT NCBI gi: 1073253 FEATURES Location/Qualifiers source 1..984 /strain="Pg-JH (ATCC 50433)" /organism="Trypanoplasma borreli" /specific_host="Piscicola geometra" rRNA 1..984 /product="large subunit ribosomal RNA" BASE COUNT 274 a 212 c 280 g 218 t ORIGIN BASE COUNT 274 a 212 c 280 g 218 t 8278 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~UA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-ag- )AGAG-AGUG A-CGUAGAAC C-UGAAGU-C 1501 GUGAUAAUG< au---aauga aa--gcaccu ccauuuca-g uggccaaaa- -ccagcccua 1561 ca-------- -------gca u---uaucc- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -aggaggg-u cuuuugacu- uucuucu--- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- --------gg 2101 caaccaagug caauacuggg guauugguga aaugggcggg uacaguggcg gugacacuca 2161 cgggcaaguc gccguucauu cccgugaugc acaaug---- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ----uuggcg 2521 -a-----u-- --------a- ggaaaug--- gggugucuuc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGAGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -cugc-cuac -gcagccau- ggugugcaca c----aacac gaa------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u gcccaacacc gg-ccg---- 3121 ---gc-cccc cg-------- cgg--cugag c]-------- ---------U UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCGGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-gu-caaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- ----uuuugg uucu--(cuu 3721 a-g)--AGUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGUAGAaaa --acugguu- 3781 uucgcuaacu ---------- ---gucaaga u---cagaaa gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-UG-GG CUCAUUCU-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU GAGGACA-AU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGu|ac-c~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.1 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22315 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 6991) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Physical and transcriptional organization of the ribosomal RNA genes of Trypanosoma (Nannomonas) cogolense JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6991) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22315 NCBI gi: 1040856 BASE COUNT 552 a 550 c 674 g 552 t 6934 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gaguca 301 uccc-cgugc ---augccac -a--uucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaau- )---ggccuc gaguuguggc augacgugcc 781 gcc------u u--gggggcu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-----ucu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucua u---gccacc c----accc- 1021 ---gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuuc--- ----gacggc cagacccagc 1561 cgcgcgugug cauguguuua uucuuugccu ugggg(guuc aaaa-)ucc- cuuggcuuuu 1621 uccauugcgc gucgcggcgu ggcgugugug agugagcgga uuugcugggu gcgcuuugca 1681 ugccucccuu uuugguggua ugcauggugu gcucuuucc- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --------gu gccucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaaggga-g ggguguuau( u-ucu-cuuu 2641 u-)------- -------gug agaa-ccuc- ---------- --uucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaa-u -gcauccgu- ggcgugcgcu uuuucuuuug uggau----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uauaug gcccaacgcc gg-cc----- 3121 --ggc-cccg uuuugu---- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-gugucc- ggcaugcuuu uucug----- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- -------aaa 3601 aagagaggag cugcccgcgc cccacagcac acuguguuug uguguggcgu gauacga--a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cucggccuua 3781 gc-----cau uuuuuaua-- ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCGUucu-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.2 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22317 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 7635) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 7635) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22317 NCBI gi: 1040858 BASE COUNT 577 a 580 c 717 g 594 t 6794 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gaguca 301 uccc-cgugc ---augccac -auauucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaag- )---ggccuc gaguuguggc augacgcgcc 781 gccuuggggg --------cu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 c----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucca u---gccacc g----auacc 1021 c--gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugugug ---------- ---uuugccu cgggg(guuc aaaa-)ucc- cguggcuuug 1621 uuacuuauug cgcgucgcgg cguggcgugu gugagugagc ggaauagcag ggcucaugca 1681 uauaucuagc ccucucucua guggggaggg cgugugugug cu-------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --cuuuccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguauugu-- augaguucuu 2641 ucucuuggg- ---------- -aga-accuc ---------- --uucccGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaug caucuguggu gugcgccuuc uuuuuugaua u--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------g gcccaaugcc gg-cc----- 3121 --ggc-cccg uuugcgu--- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|gucucagg cauguuuuua aaugaaaaag augcccgcgu 3481 cccucacuuu cucucgcgca cucuuuuucc cuuucgccuu ccuucuccuu cuucccuucu 3541 uccucucccu cuuucucucu gucacaggag agcgggugug gggugugugg uggguguuau 3601 gagggcuggg agguugggaa auauguggug uuguguggag uagugugugg cgugauacga 3661 aaaguAUUGU --|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cgcggucuua 3781 gc--cauaua uaua------ ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucu-- ------gacu ucguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|---cguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCU-CGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.3 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22318 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 5365) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5365) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22318 NCBI gi: 1040859 BASE COUNT 538 a 560 c 697 g 487 t 6980 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucauucca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccu|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcc c(-------- ---------- ---------- -----cacc- ---)gggcca 301 uccc-cgugc ---augccac -a--aucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAcg------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucuuguc ccc(gcga-- )gggggccuu gaguuguggc augacgcgcc 781 gucug----- -----gggca gg-ugcggau guggcggaau ucaaucggaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------c 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau ua|-cac--- ----gccacu c----ccc-- 1021 ---gugccuc cucuggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------UA GAGUA-GGAA GACCGAUAUG UAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugaugc gccggggguu ucgaaucccg gcgcuucucc uguugcgcga cgcggcaugg 1621 cgugcgugag ugggcggaac gaagggugug cgugcuucgc acaucgugcg cuucugcgcg 1681 uggugugcgg cauugcgcgc ccugu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------ccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg ggugu----( g-cuaaggug 2641 ag)------- ---------- ---a-accu- ---------- --cucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcggaug cauccguggu gugcgcaugc gccgcgaggc gug------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uugacu gcccaacgcc gg-cc----- 3121 --ggc-cccg auugagu--- -gg--cugcg c]-------- ---------G GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuccuc uccucugug- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -ggaggggag 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAaag cgcggucuua 3781 gcuagugugg uuuca--cau auucaugcaa gg--ccggcg gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUGCUucg-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga ugGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaagcu- ---------- --------ua aucgaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.4 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22319 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 6969) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Phylogenetic relationships among Salivarian trypanosomes inferred from the sequences of ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6969) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22319 NCBI gi: 1040860 BASE COUNT 553 a 549 c 676 g 555 t 6929 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAG CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gagcca 301 uccc-cgugc ---augccac -a--uucuca guguc-(--- ---gacc--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaaa- )---ggccuc gaguuguggc augacgugcc 781 gccuuggggg --------cu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-----uuu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucug u---gccacc c----accc- 1021 ---gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugugug uauuc----- ---ucugccu cgggg(guuc aaaa-)ucc- cuuggcuuuu 1621 uuccauugcg cgucgcggcg uggcgugugu gagugagcgg auuuguuggg cacgcuuugc 1681 augccuuuuu cuuugguaug cauggugugc ucu------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ----uuccgu gccucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguauugu-- --gugauauu 2641 ucucauuugu g--------- -aga-accuc ---------- --uucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaug caucuguggc gugcgcuuuu uucuuuugcg gauucuau-- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------g gcccaacgcc gg-cc----- 3121 --ggc-cccg uuuuguugu- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-guguccg gcaugcuuuu ucu-gaaaaa gagagaagcu 3481 gcccgcgucc caccguguuu guguguggcg ugauacga-- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cgcggccuua 3781 gccauuuuuu au--a----- ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucu-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.simiae 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma simiae.; . ACCESSION U22320 KEYWORDS . SOURCE Trypanosoma simiae. ORGANISM Trypanosoma simiae. REFERENCE 1 (bases 1 to 5204) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Phylogenetic relationships among Salivarian trypanosomes inferred from the sequences of ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5204) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22320 NCBI gi: 1040861 BASE COUNT 534 a 554 c 697 g 488 t 6989 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucauuuca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccu|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcc c(-------- ---------- ---------- -----cucc- ---)gggcca 301 uccc-cgugc ---augccac -a--aucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAcg------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucugguc ccc(augu-- )gggggccuu gaguuguggc augacgcgcc 781 gucug----- -----gggca gg-ugcggau gugguggaau ucaaucggaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------c 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau ug|-cac--- ----gccacu c----ccc-- 1021 ---gcgccuc cucuggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcauguggc gccggggguu ucgaaucccg gcgcuuuu-c uguugcgcga cgcggcgugg 1621 cgugcgugag ugggcggaau gaauggcgug cgugcucucg cauugug-ug cuugugugcg 1681 cg--gugcgg cgcgcgu-gc ccugu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------ccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguguuu--( a-cgugugua 2641 ug)------- ---------- -aga-accu- ---------- --cucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaagg cauccguggu gugcgcaugc gccgcaaggc gug------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uugagu gcucaacgcc gg-cc----- 3121 --ggc-cccg aucgagu--- -gg--cugcg c]-------- ---------G CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuccuc ucucgcggg- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ----gaggag 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cucggucuua 3781 gcuagugugg uuucac--au guucaugcaa gg--ccggcg ggcaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucg-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaagcu- ---------- --------aa aucgaaauuc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.cruzi.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma cruzi str. Y (clones EA3). ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma cruzi str. Y (clones EA3). ORGANISM Trypanosoma cruzi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M28885 LOCUS TRBRRNAZ 2378 bp ds-DNA INV 15-SEP-1990 DEFINITION T.cruzi 24S-alpha and S1 rRNA genes, complete cds., and 24S-beta rRNA gene, 5' end. ACCESSION M28885 KEYWORDS 24S ribosomal RNA alpha-subunit; 24S ribosomal RNA beta-subunit; S1 ribosomal RNA. SOURCE T.cruzi (strain Y) epimastigote DNA, clones EA3. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2378) AUTHORS Vieira de Arruda,M., Reinach,F.C., Colli,W. and Zingales,B. TITLE Sequence of the 24S-alpha ribosomal RNA gene and characterization ofa corresponding pseudogene from Trypanosoma cruzi JOURNAL Mol. Biochem. Parasitol. 40, 35-42 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.Zingales, 06-OCT-1989. FEATURES Location/Qualifiers rRNA 87..2064 /note="24S-alpha ribosomal RNA" rRNA 2111..2325 /note="S1 ribosomal RNA" rRNA 2368..>2378 /note="24S-beta ribosomal RNA" BASE COUNT 674 a 484 c 619 g 601 t ORIGIN BASE COUNT 602 a 462 c 602 g 538 t 7058 others ORIGIN 1 |nnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnn|nnnnnn 61 |nnnnnnn|n n|nnnnnnnn nnn|nnnn(n nnn-----)- |--------- ---------- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- --------|- ---------- ----(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- ---------- ------(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GUacauGC(G GCGA)GCG-A A-----GAGG -AUc------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucgguuc ---(uuauag )---gaacuu gaguuguggc aagaaacgcg 781 ucgc-----u uc-gagggcu gg-ugcagga auggugaaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaug ------aacc 1021 uaagcgccuc cuuaagcg-a a---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G CUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUGUGU-- ---------- ---------- ---------- )CUG-CCAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuca-a cggccaaaa- -ccagccucu 1561 uuuuucuuac ugauauu-au au-uauauua guagc(agag cuua-)ucc- gcugggguuu 1621 aaaauccagu ggguaacccu g--------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------a aa-agcaaga acgaggucau gguguacaaa auguguguau 2341 aag-cggaga guaagaagg- agcgugguuc auuguuuuuu cucucucuuu --ucccccuu 2401 c-gcggggag aggg-ggggg --agaggcaa agcgcuccuu -cuucuucgu guu--cucau 2461 auuu-ggcg- aa-------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaauu -gcaucugu- ggugugcaca cuuaau-gaa uaauauauaa ccauauauua 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---uuuguu- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUggAAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuug----- --uagcaagg u---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- CAAGCCCAA| U|--uaguga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-G UG-GA-GG-- --------U- -A-A-GGa-- c------GAA GCUG------ 4501 AuGGC(GUGA -)GCCUCAGa UGG|A-CCA| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaaacu- ---------- ---------a uuuaacaugc 4621 aa)CGUUGGA |U-CUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGauacu gagc------ -(----)-------- ---------- ---------- --------cc --ca-acu-- gc-ag~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.cruzi.2 9262 bp RNA RNA 04-OCT-1994 DEFINITION Trypanosoma cruzi. str. La Cruz, Jalisco; 28S ribosomal RNA; 5.8S ribosomal RNA; internal transcribed spacer 1; internal transcribed spacer 2; internal transcribed spacer 3; internal transcribed spacer 4; internal transcribed spacer 5. ACCESSION L22334 KEYWORDS 28S ribosomal RNA; 5.8S ribosomal RNA; internal transcribed spacer 1; internal transcribed spacer 2; internal transcribed spacer 3; internal transcribed spacer 4; internal transcribed spacer 5. SOURCE Trypanosoma cruzi. str. La Cruz, Jalisco. ORGANISM Trypanosoma cruzi. REFERENCE 1 (bases 1 to 6362) AUTHORS Gomez,E., Martinez-Calvillo,S. and Hernandez,R. TITLE A model for the secondary structure of the large subunit ribosomal rna from trypanosoma cruzi JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L22334 NCBI gi: 556442 BASE COUNT 1188 a 997 c 1227 g 1167 t 4683 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauucaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccg|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----cuca- ---)gaguca 301 uccc-cgugc ---augccau -a-uuucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAUc------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucgguuc ---(uuauag )---gaacuu gaguuguggc aagaaagcgu 781 cgc------u uc-gagggcu gg-ugcagga auggugaaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaug ------aacc 1021 uaagcgccuc cuuaagcg-a a---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G CUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUGUGU-- ---------- ---------- ---------- )CUG-CCAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuc--- ------aacg gccaaaacca 1561 gccucuuuuu uuuuauagcc agcuuauccg cuggg(guuc aaaa-)ucc- agugggggua 1621 acccuuuaaa aaagcaagaa c--gagguca ugguguaca- aaaugugugg uguaag-cgg 1681 agaguaagag ggagcguggu uucauuguuc ucucucuuuu ccuuuuuccu ucgcggggag 1741 agagggggag gaggagggac aaagcgcucc uucuucuuc- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug uggucuc--- auauuuggcg 2521 -aag------ ---------- gaa-au---- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaau -gcaucugu- ggugugcaca cuuuucauuu uuugu----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuugaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuuuu---- --uagcaagg c---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGG---- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- CAAGCCCAA| U|-ua-guga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-G UG-GA-GG-- --------U- -A-A-GGa-- c------GAA GCUG------ 4501 AuGGC(GUGA -)GCCUCAGa UGG|A-CCA| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaaacu- ---------- ---------a uuuaacaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGauacu gagc------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UACA A)UGCUCU-| GGUAC-||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugac- ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUGCGGCGA CAUCUGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- -------~(- -GCAA)---- 7141 ---------G C-ACAAAUGA AA-UACCACC |ACUUGGAA- -cGUUG-CUU CACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|AC( A|C--AAGC) GUAAAAG-CU U-GCUUGAUU 7681 AACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGC-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaaauauagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a ccagag-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UAGCU-ggcagg ua-uc-gu-g agggaAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUGGUUUCUG GAG|-UUUGU C(GAAC)GGC 8341 AAGUGCUCCG A-CGCUAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAGCCA-G uccc-aa-ga ccag--augc c --|------( ---)------ 8701 ---------- |--------- ---------- ---------- ---|------ ---------- 8761 ---------- ---------- -------aua ucgaaucgcc auccaaauca ucugguagcu 8821 cugccugccc ucgaaggcg- cca|-aguau c|uccaugau c--aca-aga ca---uuuau 8881 uuuug|aaac aagagaaaaa auaaauaggc cagugauaaa uauauauaua uacauaaaca 8941 ugcauauacu auguguuguu guguguuuug uuguuguguu gucucugcgc cauauauauu 9001 uauaagcaca ccucucucgc aucgugugua uguuguuguu guuguuguug uguugugugc 9061 guugugugug uguguguugu uguguuguug uugugugugu guguguguuu guauggacac 9121 acccacauuc cacacuauau uacacaccau cauacaucac auauaucaca uaauauaaau 9181 aauaacaaua auauaugugu gcacgugagc uccacggaag ggcaucccaa acgcggggag 9241 aagcggcguu ccugcag||| || // LOCUS T.cruzi.3 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma cruzi. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma cruzi. ORGANISM Trypanosoma cruzi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19411 LOCUS TRBRR24S 1109 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Trypanosoma cruzi 24S ribosomal RNA alpha subunit. ACCESSION L19411 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Trypanosoma cruzi (strain Peru) rRNA. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1109) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>1109 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..1109 /organism="Trypanosoma cruzi" /strain="Peru" /sequenced_mol="rRNA" BASE COUNT 310 a 225 c 304 g 270 t ORIGIN BASE COUNT 310 a 225 c 304 g 270 t 8153 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuca-a cggccaaaa- -ccagccucu 1561 uuuuucuuac ugauauu-au au-uauauua guagc(--ag cuua-)ucc- gcugggguuu 1621 aaaauccagu ggguaacccu g--------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- -------aaa ag-caagaac gaggucaugg uguacaaaau guguguauac 2341 auaagcggag aguaagaag- gacgugguuc auuguuuuuu cucucuuuuc --ucccccuu 2401 c-gcggggag aggg-ggggg --agaggcaa agcgcuccuu -cuucuucgu guu--cucau 2461 auuu-ggcg- aa-------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaauu -gcaucugu- ggugugcaca cuuaau-gaa uaauauauaa ccauauauua 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---uuuguu- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuug----- --uagcaagg u---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.brucei 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma brucei. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X04986,X05682,X14553 LOCUS TRBRN28S3 1502 bp ds-DNA INV 15-MAR-1988 DEFINITION T. brucei DNA for 28S beta rRNA 3'end and small rRNAs 180, 70, 140. ACCESSION X04986 KEYWORDS 28S ribosomal RNA; 28S ribosomal RNA beta; ribosomal RNA; small ribosomal RNA. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1502) AUTHORS White,T.C., Rudenko,G. and Borst,P. TITLE Three small RNAs within the 10kb trypanosome rRNA transcription unit are analogous to domain VII of other eukaryotic 28S rRNAs JOURNAL Nucleic Acids Res. 14, 9471-9489 (1986) STANDARD simple automatic REFERENCE 2 (bases 1399 to 1399) AUTHORS White,T. JOURNAL Unpublished (1987) T. White STANDARD simple automatic COMMENT [1] no enum.. Data kindly reviewed (12-MAY-1987) by White T. EMBL features not translated to GenBank features: key from to description REVISION 1399 1399 g was c in [1] FEATURES Location/Qualifiers rRNA <1..211 /note="pot. 28S beta ribosomal RNA put. 3' end between pos. 211-220" rRNA 296..478 /note="180 small ribosomal RNA" rRNA 801..877 /note="70 small ribosomal RNA" rRNA 1206..1341 /note="140 small ribosomal RNA" BASE COUNT 374 a 283 c 363 g 482 t ORIGIN LOCUS TRBRRNA 4511 bp ds-DNA INV 17-JUN-1991 DEFINITION Trypanosoma brucei gene for ribosomal RNA large subunit ACCESSION X14553 KEYWORDS ribosomal DNA; ribosomal RNA; ribosomal RNA large subunit. SOURCE Trypanosoma brucei DNA. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 4511; 1 to 4511) AUTHORS Campbell,D. JOURNAL Unpublished (1989) COMMENT See for overlapping sequence. From EMBL 27 entry TBRRNA; dated 06-FEB-1990. FEATURES Location/Qualifiers rRNA 1..4511 /note="ribosomal RNA large subunit" BASE COUNT 1100 a 998 c 1190 g 1223 t ORIGIN LOCUS TRBRRN58 1359 bp ds-DNA INV 30-SEP-1988 DEFINITION Trypanosoma brucei 5.8S ribosomal DNA and flanking regions. ACCESSION X05682 KEYWORDS 5.8S ribosomal RNA; internal transcribed spacer; ribosomal DNA; ribosomal RNA. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1359) AUTHORS Campbell,D.A., Kubo,K., Clark,C.G. and Boothroyd,J.C. TITLE Precise identification of cleavage sites involved in the unusual processing of trypanosome ribosomal RNA JOURNAL J. Mol. Biol. 196, 113-124 (1987) STANDARD simple automatic COMMENT *source: strain=427; see x05683 for further downstream LS1 sequence Data kindly reviewed (15-Feb-1988) by Boothroyd J. C. EMBL features not translated to GenBank features: key from to description SITE 57 398 ITSI SITE 569 1158 ITSII FEATURES Location/Qualifiers rRNA <1..56 /note="small subunit RNA" rRNA 399..568 /note="5.8S RNA" rRNA 1159..1359 /note="large subunit RNA (LS1)" BASE COUNT 377 a 234 c 308 g 440 t ORIGIN BASE COUNT 946 a 995 c 1165 g 1082 t 5074 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauuuca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----ucuc- ---)gagcca 301 uccc-cgugc ---augccac -a-uuucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------uca )--gac-cug agu-gugg-c aGG----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAUu------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuauau )---gaccuc gaacuguggc accauuuuug 781 uggccguucu ua-uagggcu gg-ugcaggc guggcggaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aacac-auuu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCAU UA|--cauuc cuuagccacg g-----agcc 1021 uacgcgccuc cucauguu-c ggu-ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------UA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGUAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuucu-u uuuuu-uacg gccagaccca 1561 accucgccgc -------gca a--uuuccuu ccggg(guuc aaca-)ucc- ggugggccuu 1621 ca--cugugc ggguuucucu uuugagguca uggggugcgu gagugggcgg aauaaa-ggg 1681 ucgguguguu gugugugggu uuuuucucuc acucucuucc uccuucccug uu-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------cgug cg-ucuc--- gacgcuggcg 2521 -aug------ ---------- gaa-aug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gaguau---( guaug-ugag 2641 aa)------- ---------- ---c-ucuu- ---------- --uuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -gugugauuu uacacccgu- ggcgugcgca auuucucuuu uuugu----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----guuuuu gcccaacgcc gg-cc----- 3121 --ggc-cccc cgug------ -gg--cugcg c]-------- ---------G CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-gucuuua a--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -ccca-gcc- 3781 uuaguua--- ---uuu---- --uaacaagg cuuuugggua cauaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uugUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGCCCCA| U|gugcguga uuGCCCAU-- --UAUUCCU| (- -----)gccc ucccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -g-A-GGa-- c------GAA GCCG------ 4501 AuGGC(GCGA -)GCCUCGGa UGG|A-CCC| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaa----- ---------- ---uauuuuu ucuuaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucacu gagc------ --------------- ---------- ---------- -------ucc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UCGA A)UGCUCU-| GGUAAc||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---c------ ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUGCGGCGA CUUUGGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCAA)---- 7141 ---------G C-UCAAAUGA AA-UACCACC |ACUCGGAA- -CGUUG-CUU CACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUGGA|AC( A|C--AAGC) GUAAAUG-CU U-GCUUGAUU 7681 aACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaagaacagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a cCAGAG-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UGGCU-ggcaGG CA-UC-gu-G AGGGAAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUGGUUUCUG GAG|-UUUGU C(GAAG)GGC 8341 AAGUGCUCCG A-CGCUAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAACCA-G UCCC-aa-ga ccgG--GUGC C --|------( ---)------ 8701 --uuuugucc |cucuc(-ca aacga)ga-g uacau----g cau|gggcug gcaugagc-- 8761 -g-g-cacgc uc-ca----- -cgaccgugg ggcucgag(g ggca)cuuua cgucccgagg 8821 cgc---ugaa ----ccuug- aug|-cuugg -|--aauuuc a--u-g-cuc ag----g-ga 8881 cuuuu|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.rotatori 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma rotatorium. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma rotatorium. ORGANISM Trypanosoma rotatorium. REFERENCE 1 (bases 1 to 6362) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U39582 LOCUS TRU39582 995 bp rRNA INV 26-NOV-1995 DEFINITION Trypanosoma rotatorium large subunit ribosomal RNA. ACCESSION U39582 KEYWORDS . SOURCE Trypanosoma rotatorium. ORGANISM Trypanosoma rotatorium Eukaryotae; mitochondrial eukaryotes; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma. REFERENCE 1 (bases 1 to 995) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. TITLE Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa JOURNAL Unpublished REFERENCE 2 (bases 1 to 995) AUTHORS Lukes,J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) J. Lukes, Institute of Parasitology, Dept. of Molecular Parasitology, Branisovska 31, Ceske Budejovice, 37005, Czech Republic COMMENT NCBI gi: 1073254 FEATURES Location/Qualifiers source 1..995 /strain="B21" /organism="Trypanosoma rotatorium" /specific_host="Rana catesbeiana" rRNA 1..995 /product="large subunit ribosomal RNA" BASE COUNT 274 a 215 c 297 g 209 t ORIGIN BASE COUNT 274 a 215 c 297 g 209 t 8267 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ugggucuggA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aa--guaccu ccauuuca-a cggccaaaa- -ccagccuca 1561 ca-------- -------gca u--uu-uccg -gcgg-guuc aaa---ucc- -gu-cgggua 1621 acc-aagugc -aagaaacuu a--gagguca uggug----- aaaug----- g----g-cgg 1681 agaguaag-- ---------g ggugcugcac ggcgaaacgc ga-------- --gcgg---- 1741 ---------- -ugcu----- ---------- uucuucucc- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug -auccuc--g auguuggcga 2521 a--------- ---------- ggaagug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGgag gagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaauu -gcaucugu- ggugugcaca c-----auuu -aaaa----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------a-u gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuugaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AGCA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGgccaaac aaaccuacc- 3781 uuagccaaca ---------- ----gcaagg u---cggaua gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-UG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGGCGGUGG CC(AUGG-AA GUC)GGCACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Granul 9262 bp RNA RNA ~?~???? DEFINITION Granuloreticulosea. ACCESSION No information KEYWORDS No information. SOURCE Granuloreticulosea. ORGANISM Granuloreticulosea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... ..........