Last modified on 08 May 2012.
Overview:
Online appendices to published papers. Currently the Gutell Lab research focuses on five major categories: RNA Structure, Motifs, Folding, rRNA-based Phylogeny, and Lateral Gene Transfer.
- 4A. Structure
- [2002] The Accuracy of Ribosomal RNA Comparative Structure Models (Current Opinion)
- [2002] Modeling a Minimal Ribosome Based on Comparative Sequence Analysis
- [2002] Distribution of rRNA Introns in the Three-Dimensional Structure of the Ribosome
- [2003] The Exon Context and Distribution of Euascomycetes rRNA Spliceosomal Introns
- [2010] Fragmentation of the Large Subunit Ribosomal RNA Gene in Oyster Mitochondrial Genomes
- [2012] The Fragmented Mitochondrial Ribosomal RNAs of Plasmodium falciparum
- [2012] A Comparison of the Crystal Structures of the Eukaryotic and Bacterial SSU Ribosomal RNAs Reveals Common Structural Features in the Hypervariable Regions
- [PREP] Three-Dimensional Structure
- 4B. Motifs
- [2000] U-Turn Motif: Predicting U-turns in Ribosomal RNA with Comparative Sequence Analysis
- [2000] A Story: Unpaired Adenosines in Ribosomal RNAs
- [2001] AA.AG@Helix.Ends: A:A and A:G Base-pairs at the Ends of 16 S and 23 S rRNA Helices
- [2003] The Lonepair Triloop: A New Motif in RNA Structure
- [2004] Diversity of Basepair Conformations and Their Occurrence in rRNA Structure and RNA Structural Motifs
- [2006] The UAA/GAN Internal Loop Motif: A New RNA Structural Element That Forms a Cross-strand AAA Stack and Long-range Tertiary Interactions
- 4C. Folding
- 4D. Phylogenetic Analysis of Ribosomal RNA
- [2000] Phylogenetic Analysis of Molluscan Mitochondrial LSU rDNA Sequences and Secondary Structures
- [2001] Accelerated Evolution of Functional Plastid rRNA and Elongation Factor Genes Due to Reduced Protein Synthetic Load After the Loss of Photosynthesis in the Chlorophyte Alga Polytoma
- [2002] Reconstructing the Tree of Life with Ribosomal RNA Sequences and Structures: Integrating Phylogeny, Computational Methods, and a RNA Database
- [2003] ITS Secondary Structure Derived from Comparative Analysis: Implications for Sequence Alignment and Phylogeny of the Asteraceae
- [2006] The Evolution of Elongate Shape in Diatoms
- [2009] Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae)
- [2009] The Limits of Nuclear-Encoded SSU rDNA for Resolving the Diatom Phylogeny
- [2010] Placement of Attine Ant-Associated Pseudonocardia in a Global Phylogeny (Pseudonocardiaceae, Actinomycetales): a Test of Two Symbiont-Association Models
- 4E. Lateral Gene Transfer: Group I Introns
