Abbreviations Used:


Additional Information: [ rRNA | tRNA | Introns | Fungal Intron Distribution ]

rRNA Alignments:

Reference Sequence Information:

Abbreviation Alignment Total # Seqs
(16S) (23S) (5S)
T Three Domains/Two Organelles 8513 1045 612
3 Three Domains 7180 620 N/A
B (eu)Bacteria 5859 326 302
A Archaea 264 41 44
C Chloroplast 182 103 N/A
E Eucarya (Nuclear) 1054 263 298
M Mitochondria 1160 312 N/A

tRNA Alignments:

Reference Sequence Information:

Abbreviation Alignment Total # Seqs
Z All Type 1 tRNAs 895
A Alanine tRNAs 64
R Arginine tRNAs 62
N Asparagine tRNAs 35
D Aspartic Acid tRNAs 35
C Cysteine tRNAs 19
X Methionine Initiator tRNAs 65
E Glutamic Acid tRNAs 49
Q Glutamine tRNAs 35
G Glycine tRNAs 69
H Histidine tRNAs 38
I Isoleucine tRNAs 56
K Lysine tRNAs 53
M Methionine tRNAs 36
F Phenylalanine tRNAs 54
P Proline tRNAs 55
T Threonine tRNAs 49
W Tryptophan tRNAs 30
Y Tyrosine tRNAs 47
V Valine tRNAs 65

Intron Alignments:

Group I Group IIA Group IIB
Reference Sequence Information: Tetrahymena thermophila LSU 1925 (J01235) Saccharomyces cerevisiae mitochondrion OX1 [intron #1] (V00694) Saccharomyces cerevisiae mitochondrion OX1 [intron #5] (V00694)
Abbreviation Alignment Total # Seqs
Group I Group IIA Group IIB
T All Group II(A or B) Introns -- 171 571
A Group IA Introns 82 -- --
B Group IB Introns 72 -- --
C1-2 Group IC1 and IC2 Introns 305 -- --
C3 Group IC3 Introns 125 -- --
D Group ID Introns 19 -- --
E Group IE Introns 46 -- --
UNK Other Group I Introns 41 -- --

Fungal Intron Distribution:

Reference Sequence Information:

Abbreviation Alignment Total # Seqs
A All Fungal SSU rRNAs 1434
I Spliceosomal intron-containing fungal SSU rRNAs 73
N non-spliceosomal intron-containing fungal SSU rRNAs 1361