Last modified on 22 November 2010.


Raw data (sequences, structure model diagrams, and metadata) with searchable interfaces.

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Explanation of Content:

3A. Indices of Metadata

Analyses that relate RNA sequence patterns to structure.

Index of Current RNA Sequences and Structures

For selected groups of organisms, counts of the number of available sequences (metadata) and structure models are tabulated.

New and Updated RNA Structures

List of secondary structure diagrams that have been created or modified recently.

3B. General Access to Metadata

Graphical interfaces used to access the CRW Site's Relational Database Management System (RDBMS) and the data which it contains.

RDBMS (Standard)

Powerful interface that allows the user to search for any values present in one or a combination of the attributes and to sort the output on any combination of attributes.

RDBMS (PhyloBrowser)

Awaiting Reimplementation... semi-restrictive interface that allows the user to navigate through the phylogenetic tree to search for those entries that are within specific phylogenetic groups.

3C. Mass Data Retrieval

Interfaces to download larger volumes of data.

Sequence Alignment Retrieval

Access to the sequence alignments used in the analyses presented at the CRW Site; sequence alignments are available in GenBank and AE2 (Macke) formats.

Secondary Structure Model Diagram Retrieval

Download multiple secondary structure diagrams, selecting from organism names, phylogeny (general: Archaea, Bacteria, Eukaryota, and Virus), RNA molecule, and cell location, as well as selecting for PostScript, PDF, or BPSEQ display formats.

Structure/Basepair Information Retrieval

Download collected sets of structure/basepair information files in six formats (BPSEQ, alden, RNAml, ct, nopct, and bracket).

Old Secondary Structure Model Diagrams

Outdated secondary structure diagrams which may still be of use to some researchers.